PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do001263.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family TCP
Protein Properties Length: 244aa    MW: 26676 Da    PI: 6.6758
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do001263.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP113.62.7e-3577174395
         TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg......kaaksaa 95 
                  ++drhski T++g RdRR+Rls+ +a++fF+Lqd+LGfdk+skt++WLl+q+kpai+ l +   ++a ++ + + +  +++ ss+      + ++++a
  Do001263.1  77 FRTDRHSKIRTAQGVRDRRMRLSVGVAREFFALQDRLGFDKASKTVNWLLTQSKPAIDRLHDAAEPAAASSGPTTVVMRGGEGSSSstccfkD-SREKA 174
                 689************************************************************666665554445544444333333344431.11111 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136933.98578136IPR017887Transcription factor TCP subgroup
PfamPF036343.2E-3378158IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MSSWDGYGGQ IFPADMFRHQ ETLEAVFQQA PVTMVAPLRR VADAAGEGEL MMRDAAPVVM  60
VDGGVHAAAA APRRRPFRTD RHSKIRTAQG VRDRRMRLSV GVAREFFALQ DRLGFDKASK  120
TVNWLLTQSK PAIDRLHDAA EPAAASSGPT TVVMRGGEGS SSSTCCFKDS REKATEKGRS  180
RGGRDGPAAL MEEHGGGELD WITSDAAEAV PPQPPQSMDE LEYCYQYYLQ IEEMTRCNNG  240
GVPR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A7e-1483136154Putative transcription factor PCF6
5zkt_B7e-1483136154Putative transcription factor PCF6
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo001263.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9614983e-95EU961498.1 Zea mays clone 235951 teosinte branched1 protein mRNA, complete cds.
GenBankKJ7277623e-95KJ727762.1 Zea mays clone pUT5707 TCP transcription factor (TCP11) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004973503.21e-108transcription factor TB1
TrEMBLA0A1E5VGN21e-180A0A1E5VGN2_9POAL; Uncharacterized protein
STRINGSi015230m1e-109(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40523172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18550.11e-24TCP family protein