PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do001354.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

bHLH

Protein Properties

Length: 201aa MW: 20849.3 Da PI: 10.7147

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do001354.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	21.5	4.2e-07	24	80	6	53
HHHHHHHHHHHHHHHHHHHCTSCC.C...........TTS-STCHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.as........kapskKlsKaeiLekAveYIks 53 + +Er+RR+++N +++L +l+ +s + + + ++ + Le+A YI++ Do001354.1 24 KTVERNRRNQMNALYSRLDSLVRAgSSpssappavQRGLPAMTRPDRLEEAAAYIRQ 80 679*******************666999999955555559999********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	8.562	18	81	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.0E-7	23	97	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.25E-7	24	96	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.6E-4	25	80	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence Send to blast
MDMPPPPPPF GGPGGAGGGK PDRKTVERNR RNQMNALYSR LDSLVRAGSS PSSAPPAVQR 60 GLPAMTRPDR LEEAAAYIRQ TTERVERLKE RKRELTAARA GSSSQGSGSG SGSSSAAGAT 120 EVEVQHLGSG LHAILVAGAP PSDGASFHRA VRAVEEAGGE VQNAHFSVVG ARAVYTIHTL 180 VAEGGIERVV QRLKAALRGD A

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do001354.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025798292.1	1e-98	transcription factor bHLH162-like isoform X1
TrEMBL	A0A1E5VEJ3	1e-139	A0A1E5VEJ3_9POAL; Uncharacterized protein
STRING	Pavir.J36523.1.p	1e-101	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11987	29	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20970.1	3e-11	bHLH family protein