PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do001401.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family C2H2
Protein Properties Length: 200aa    MW: 21233.8 Da    PI: 8.743
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do001401.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.90.001484106123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 y+Cp+C++ F      + H+r+H
  Do001401.1  84 YPCPICHRLFGAVKAVHGHQRSH 106
                 99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.07E-783154No hitNo description
PfamPF139120.007684108IPR007087Zinc finger, C2H2
SMARTSM003550.4984106IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.93384106IPR007087Zinc finger, C2H2
PROSITE patternPS00028086106IPR007087Zinc finger, C2H2
PfamPF139125.8E-8132156IPR007087Zinc finger, C2H2
SMARTSM003551.8132154IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.198132159IPR007087Zinc finger, C2H2
PROSITE patternPS000280134154IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MNGAQVFFYG VAYGQFLAGA VSSGGSGGGD DSNRPWRPPK SSHEADAAPP VLQRKKRSSS  60
ASHKKQVKDP AAPAPEGEGQ AGPYPCPICH RLFGAVKAVH GHQRSHPERD WRGMAPPRPP  120
PPVAADGRQY RYACDRCGAP FETRQALGGH RASHSGKMGC FWLSRQPAAP AVEPAAAPAP  180
ASIPVFPFDL NEPAVPEEEE
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo001401.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004967303.19e-72zinc finger protein ZAT3
TrEMBLA0A1E5VRT21e-141A0A1E5VRT2_9POAL; Uncharacterized protein
STRINGPavir.J33608.1.p2e-77(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130102729
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17180.15e-12C2H2-like zinc finger protein