PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do001411.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ERF
Protein Properties Length: 199aa    MW: 20626.7 Da    PI: 9.7343
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do001411.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.76.8e-19454155
         AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                ++++GVr ++ +gr++AeIrdp     r +r++lg+f+tae Aa+a++ a++ ++g
  Do001411.1  4 PRFRGVRKRP-WGRYAAEIRDP---A-RkARVWLGTFDTAEAAARAYDTAALHFRG 54
                689*******.**********8...2.35***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008479.5E-13454IPR001471AP2/ERF domain
CDDcd000184.01E-21464No hitNo description
Gene3DG3DSA:3.30.730.101.3E-31562IPR001471AP2/ERF domain
PROSITE profilePS5103224.5562IPR001471AP2/ERF domain
SuperFamilySSF541714.32E-22563IPR016177DNA-binding domain
SMARTSM003803.7E-36568IPR001471AP2/ERF domain
PRINTSPR003671.3E-10617IPR001471AP2/ERF domain
PRINTSPR003671.3E-102844IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MMEPRFRGVR KRPWGRYAAE IRDPARKARV WLGTFDTAEA AARAYDTAAL HFRGPKAKTN  60
FPVAFAAGAH PLPPPPKMML AAVSPSSSTV ESSSRDSPAA SPVAHALPAP SLDLSLGMPA  120
MVAAQPFLFL DPRLAVTVAV PAPVPCRPAA VVVAGANKKA ATCREDEQSD TGSSSSVVDA  180
SPAVGVGLDL NLPPPAEVA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-215691479Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo001411.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0180011e-160BT018001.1 Zea mays clone EL01N0526G07.c mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025823499.12e-90ethylene-responsive transcription factor 4-like
TrEMBLA0A1E5UZX71e-136A0A1E5UZX7_9POAL; Uncharacterized protein
STRINGPavir.Ga00485.1.p2e-85(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118532537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15210.11e-22ethylene responsive element binding factor 4