PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do001452.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family Trihelix
Protein Properties Length: 395aa    MW: 42124.1 Da    PI: 8.6469
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do001452.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix53.66e-1776164271
    trihelix   2 WtkqevlaLiearremeerlrrgk...................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr 71 
                 Wt +e+l Li+a+  +++r   g                    +++++W++v ++++ +g+ rs++qC++kw+nl ++ykk+++ e + 
  Do001452.1  76 WTLHETLILITAKHLDDDRRAGGLhghghghgvpaagspttprSAEQRWKWVENYCWNHGCLRSQNQCNDKWDNLLRDYKKVRDYETRT 164
                 *************977766665434445666777777777777*****************************************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.3368151IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.3E-569153IPR009057Homeodomain-like
PfamPF138377.6E-1175162No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MSANTVAKAA PQAPMSGSSD PSPSSSAAVS PLALLRPHPH AHAHGHMAPP SPASAGPAPP  60
PPSPASAPRD YRKGNWTLHE TLILITAKHL DDDRRAGGLH GHGHGHGVPA AGSPTTPRSA  120
EQRWKWVENY CWNHGCLRSQ NQCNDKWDNL LRDYKKVRDY ETRTAAAAAA APGSGGGAGA  180
LPSYWTMERH ERKDRNLPTN LAPEVFDALT DVLSRRAARR GGAAIAAAPP SPLALPPPPP  240
PPPPPAPPSP PKPLIAQPRP PPPPPLALPT AVAPPATSVS AEELTGSSES GEEEEGSEED  300
GEEEPEPKRR RLNRLGSSVV RSATVLARTL VACEEKRERR HREVLELEER RLRLEEQRTE  360
VRRQGFAGLV SAVNSLSSAI HALVSDHRSG DSASR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1307311KRRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo001452.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002448740.21e-133trihelix transcription factor ASR3
TrEMBLA0A1E5W5T70.0A0A1E5W5T7_9POAL; Uncharacterized protein
STRINGSb06g032410.11e-133(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32943571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.13e-41Trihelix family protein