PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do001631.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family MIKC_MADS
Protein Properties Length: 258aa    MW: 29465.1 Da    PI: 10.2061
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do001631.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.71.7e-29959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                krien + rqvtfskRrng+lKKA+ELSvLCdaev +i+fs++gklye++s
  Do001631.1  9 KRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVGLIVFSPRGKLYEFAS 59
                79***********************************************86 PP
2K-box70.64.9e-2479171698
       K-box   6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                 ++++++++ ++ + ++  L +++e L++++R++lGe+Le++s++eL++Le +Leksl  iR kK++ll +qi +l++ke+ l ++nk+Lr+k+
  Do001631.1  79 SNKAAQHDIQQVKADALSLANRLEALEKSKRKFLGENLEDCSVEELHSLEVKLEKSLHVIRGKKTQLLEQQIAKLKEKERTLLKDNKELREKV 171
                 344788889**********************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.483161IPR002100Transcription factor, MADS-box
SMARTSM004321.4E-40160IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.76E-32385IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-30323IPR002100Transcription factor, MADS-box
CDDcd002656.94E-41379No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.3E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-303859IPR002100Transcription factor, MADS-box
PfamPF014862.8E-2584171IPR002487Transcription factor, K-box
PROSITE profilePS5129714.14887177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MVRGKTEMKR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEVGLIVFSP RGKLYEFASA  60
TSLQKTIDRY KAYTRENLSN KAAQHDIQQV KADALSLANR LEALEKSKRK FLGENLEDCS  120
VEELHSLEVK LEKSLHVIRG KKTQLLEQQI AKLKEKERTL LKDNKELREK VIAINHLVSV  180
KHLRSVKYPI SYILIYHSLL LSLQQRNVQP PLVAPGPNRC LPPWPRNLPA PCNNDMDVET  240
ELYIGLPGRE RSSNRDSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A4e-17173172MEF2C
5f28_B4e-17173172MEF2C
5f28_C4e-17173172MEF2C
5f28_D4e-17173172MEF2C
6byy_A4e-17174173MEF2 CHIMERA
6byy_B4e-17174173MEF2 CHIMERA
6byy_C4e-17174173MEF2 CHIMERA
6byy_D4e-17174173MEF2 CHIMERA
6bz1_A4e-17174173MEF2 CHIMERA
6bz1_B4e-17174173MEF2 CHIMERA
6bz1_C4e-17174173MEF2 CHIMERA
6bz1_D4e-17174173MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo001631.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0648230.0BT064823.1 Zea mays full-length cDNA clone ZM_BFb0180I10 mRNA, complete cds.
GenBankKJ7269280.0KJ726928.1 Zea mays clone pUT3473 MADS transcription factor (MADS76) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004983814.11e-142MADS-box transcription factor 56
SwissprotA2Z9Q71e-101MAD56_ORYSI; MADS-box transcription factor 56
TrEMBLA0A1L5YFA41e-148A0A1L5YFA4_PANVG; SL2
STRINGSb01g030570.11e-133(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP14133379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45660.11e-67AGAMOUS-like 20