PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do001667.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family C2H2
Protein Properties Length: 228aa    MW: 23556.9 Da    PI: 6.1604
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do001667.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.000266789123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                y+C  C++ F++   L  H++ H
  Do001667.1 67 YECVFCKRGFTTAQALGGHMNIH 89
                99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.61E-66593No hitNo description
PROSITE profilePS5015710.996794IPR007087Zinc finger, C2H2
PROSITE patternPS0002806989IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MDSGSSNMES KASSGDEAAI AMTSPGPESV AAAGGAGEEE AAPAAVAGEE AAAVSPPALA  60
ASPRPYYECV FCKRGFTTAQ ALGGHMNIHR RDRAKPARDS PAGITSVSRN VECYNKYRHL  120
ASYPPAQSAP IPVGAGSSFG MYYVSSGAAA AGAARLDAEG GSPSSVSPRE LSLFAEANRD  180
QDLHLGLGRH GHIGDGSRTP EGASERQQAG EPERELDLEL RLGRRPRH
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo001667.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1454772e-40AC145477.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone B1402B06, complete sequence.
GenBankAP0149612e-40AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025805746.11e-106uncharacterized protein LOC112884551
TrEMBLA0A1E5WER21e-160A0A1E5WER2_9POAL; Uncharacterized protein
STRINGSi025069m2e-97(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81112736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43540.15e-17C2H2 family protein