PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do001797.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family WRKY
Protein Properties Length: 363aa    MW: 38462.2 Da    PI: 6.8543
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do001797.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY83.61.9e-26190248259
                 --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                 +D ++WrKYGqK++kgs++pr+YY+C+s  gC+++k vers   p v+++tY  eH h+
  Do001797.1 190 SDPWAWRKYGQKPIKGSPYPRGYYKCSSMkGCMARKLVERSPAKPGVLIVTYMAEHCHP 248
                 699***********************9988***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-26188250IPR003657WRKY domain
SuperFamilySSF1182903.92E-24189250IPR003657WRKY domain
SMARTSM007743.2E-31189249IPR003657WRKY domain
PROSITE profilePS5081129.126190250IPR003657WRKY domain
PfamPF031062.3E-22191248IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MRCALLHMAE HFNDWDLQAL VRSCATVAHP DHPPPPPEPA TAPRGARAKA EAEAAPAPEP  60
TTPAAPRGEA PTRAAAPVAA QGQERAPPVV AAALLYDLEY LDLDHKPFLL PVTTQAPRGA  120
RGAADDGRER EVMISFPAAA ASTSGGMQQR AVPPGRKAGA RTPRPKRSKK SQLKKVVREM  180
PVADGGASSS DPWAWRKYGQ KPIKGSPYPR GYYKCSSMKG CMARKLVERS PAKPGVLIVT  240
YMAEHCHPVP TQLNALAGTT RHKSASASGA ATEDNNAASS SPRSHEQGPA AERAAGGEHD  300
SNEASTATAL EFGGEEMAAL DDENELWPAG MDLDELLAPV DDDFDFKRVV DDGDGVLGRR  360
LSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B9e-18170251280Disease resistance protein RRS1
5w3x_D9e-18170251280Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo001797.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1114161e-107AK111416.1 Oryza sativa Japonica Group cDNA clone:002-182-G03, full insert sequence.
GenBankAY8706011e-107AY870601.1 Oryza sativa (japonica cultivar-group) WRKY12 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969219.11e-160probable WRKY transcription factor 65
TrEMBLA0A1E5UWP30.0A0A1E5UWP3_9POAL; WRKY transcription factor 22
STRINGSi001863m1e-160(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42793070
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.11e-37WRKY family protein