PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do001799.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family HSF
Protein Properties Length: 320aa    MW: 35114.7 Da    PI: 6.3133
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do001799.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind104.21.1e-32261172102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   F+ k+y+++ d++++ l++w +++nsfvv+d+  f++ +Lp +Fkhsnf+SFvRQLn+YgF+kv+ ++         weF+h+sF +g+++ll +i 
    Do001799.1  26 FVAKTYQMVCDPRTDALVRWGRENNSFVVVDPAGFSRLLLPCFFKHSNFSSFVRQLNTYGFRKVHPDR---------WEFAHESFLRGQTHLLPRIV 113
                   9********************999*****************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k+
    Do001799.1 114 RRKK 117
                   *987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.109.4E-3622115IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.5E-5122115IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.13E-3323115IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004475.0E-2926115IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-162649IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-166476IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406589IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-167789IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MDGLHTELAL GLLGCGGGDE LQTAPFVAKT YQMVCDPRTD ALVRWGRENN SFVVVDPAGF  60
SRLLLPCFFK HSNFSSFVRQ LNTYGFRKVH PDRWEFAHES FLRGQTHLLP RIVRRKKRGE  120
GSGGGAASCS SGGEAVQYAA AGCVLGEDDR QDGDQEEREA LLEEVQRLRR EQTAIGEELA  180
QMSRRLQATE RRPDQLMSFL ARLAEDPDGV TRHLVEQAAE KKRRRMQLSS HPISPIPPPP  240
VHPLLALGSK DCDGWQRAEQ KPAIVLPSFD PTPSYCVVQQ VPEFVGGGNG GGGLIGMGLT  300
ADDTAVEAPF PFCLLGQGFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-221311516129Heat shock factor protein 1
5d5v_B3e-221311516129Heat shock factor protein 1
5d5v_D3e-221311516129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo001799.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0694791e-138AK069479.1 Oryza sativa Japonica Group cDNA clone:J023019J23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969221.11e-168heat stress transcription factor C-1a
SwissprotQ6VBA41e-130HFC1A_ORYSJ; Heat stress transcription factor C-1a
TrEMBLA0A1E5UWP90.0A0A1E5UWP9_9POAL; Heat stress transcription factor C-1a
STRINGSi002292m1e-167(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.15e-59heat shock transcription factor C1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]