PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do001828.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family AP2
Protein Properties Length: 444aa    MW: 46454.1 Da    PI: 7.1279
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do001828.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP222.62.7e-07113134122
         AP2   1 sgykGVrwdkkrgrWvAeIrdp 22 
                 s+y+GV++++++grW+++I+ +
  Do001828.1 113 SQYRGVTFYRRTGRWESHIWAY 134
                 78*****************984 PP
2AP246.49.6e-15187237155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s+y+GV+ +k  grW+A+   +     +k+++lg f+t+eeAa+a+++a+ k +g
  Do001828.1 187 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEEEAARAYDRAAIKCNG 237
                 89********.7******5553..2.26**********************99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.4E-5113152IPR016177DNA-binding domain
SMARTSM003805.6E-7114157IPR001471AP2/ERF domain
PfamPF008479.8E-11187237IPR001471AP2/ERF domain
CDDcd000183.20E-25187247No hitNo description
SuperFamilySSF541711.83E-18187247IPR016177DNA-binding domain
PROSITE profilePS5103216.489188245IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-17188245IPR001471AP2/ERF domain
SMARTSM003801.2E-33188251IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010073Biological Processmeristem maintenance
GO:0010093Biological Processspecification of floral organ identity
GO:0048316Biological Processseed development
GO:0048481Biological Processplant ovule development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MWDLNDSPAA EATPPSPSAD DSGASSSSAA ALVEIPDDAD DDSAAAAAAD AVVTRQFFPA  60
PAAVAPGSAS ARGGWLRLSA AAPPPAGAAT AAGPAGGASS NKKSRRGPRS RSSQYRGVTF  120
YRRTGRWESH IWAYDRAAIK FRGVEADINF SLEDYQDDMK QQMGNLSKEE FVHVLRRQST  180
GYPRGSSKYR GVTLHKCGRW EARMGQFLGK KYVYLGLFDT EEEAARAYDR AAIKCNGKDA  240
VTNFDPSIYA EELEPAAATS GGGGGDEHNL DLSLGSSAGS KRGSLDGGSG AGDDETSDQR  300
VPMAFDLDWQ TAAARSTKAK FDASSKQPQM PPALQAAHHL PFSPRHQQFL STGDPGTAGG  360
LSLAIGGPGG AGGHWPPQLQ QQLLHGWGNG GGTSWPLPPH PPPPTNAAAA SAAAASSRFP  420
PYVTTQGPPS WVQKNGFHSL ARPT
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor (PubMed:22408071). Involved in spikelet transition and development (PubMed:22408071). Prevents lemma and palea elongation as well as grain growth (PubMed:22408071). Required for seed shattering through specifying abscission zone (AZ) development (PubMed:22408071). {ECO:0000269|PubMed:22408071}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo001828.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0561880.0BT056188.1 Zea mays full-length cDNA clone ZM_BFb0070P06 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022684171.10.0AP2-like ethylene-responsive transcription factor TOE3 isoform X1
SwissprotB8AVJ91e-169APL25_ORYSI; APETALA2-like protein 5
TrEMBLA0A1E5VX800.0A0A1E5VX80_9POAL; Floral homeotic protein APETALA 2
STRINGSi012635m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55143658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.26e-78AP2 family protein
Publications ? help Back to Top
  1. Zhou Y, et al.
    Genetic control of seed shattering in rice by the APETALA2 transcription factor shattering abortion1.
    Plant Cell, 2012. 24(3): p. 1034-48
    [PMID:22408071]