PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do001904.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family SBP
Protein Properties Length: 109aa    MW: 11884.2 Da    PI: 8.3532
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do001904.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP37.75.3e-1260109148
                 --SSTT-----TT--HHHHHTT--HHH..HT-S-EEETTEEEEE-TTTSS CS
         SBP   1 lCqvegCeadlseakeyhrrhkvCevh..skapvvlvsgleqrfCqqCsr 48 
                 +CqvegC  +l +akeyhr     +     + p v+v+g+e+r CqqCsr
  Do001904.1  60 RCQVEGCGLELDTAKEYHRPPEAPRLRgpHQVPRVVVAGQERRRCQQCSR 109
                 6******************987776652257899***************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.5E-1154109IPR004333Transcription factor, SBP-box
PROSITE profilePS5114111.95658109IPR004333Transcription factor, SBP-box
SuperFamilySSF1036125.49E-1159109IPR004333Transcription factor, SBP-box
PfamPF031101.4E-761109IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 109 aa     Download sequence    Send to blast
MEWTAPKPAA LPSSPPLLWD WADHAAARSG SSGDAPVRHG GREREGQRAK GEEGGGAEVR  60
CQVEGCGLEL DTAKEYHRPP EAPRLRGPHQ VPRVVVAGQE RRRCQQCSR
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo001904.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025805124.17e-48squamosa promoter-binding-like protein 4
SwissprotQ6H5092e-19SPL4_ORYSJ; Squamosa promoter-binding-like protein 4
TrEMBLA0A1E5W7S74e-71A0A1E5W7S7_9POAL; Uncharacterized protein
STRINGPavir.Ab00499.1.p3e-47(Panicum virgatum)
STRINGPavir.J20730.1.p4e-49(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62712952
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.38e-12squamosa promoter binding protein-like 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]