PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do002151.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ERF
Protein Properties Length: 214aa    MW: 23802.2 Da    PI: 4.7112
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do002151.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.16.6e-16130181155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                 s y+GV+++ k+grW A+I  +        + ++lg+f t+eeAa+a++ a+ +++g
  Do002151.1 130 SIYRGVTRRQKDGRWQARIGLV-----AetRDIYLGTFKTEEEAAEAYDIAAIEIRG 181
                 57****************9997.....335*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.15E-18130191IPR016177DNA-binding domain
PfamPF008471.9E-9130181IPR001471AP2/ERF domain
CDDcd000185.31E-23130189No hitNo description
PROSITE profilePS5103218.65131189IPR001471AP2/ERF domain
SMARTSM003806.1E-27131195IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.7E-20131190IPR001471AP2/ERF domain
PRINTSPR003677.3E-6132143IPR001471AP2/ERF domain
PRINTSPR003677.3E-6171191IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MEEKAAGESG DEGTIERSQS INLNTVPPVA VEARSTQENG QAHGAGVSGT KDSRIWNPEQ  60
SSGADQKLPK CEQVDYESEV EGHENPTEKA ALVTLITQYE KELEDIRDLS REECVTYLRR  120
RSSCFSRGAS IYRGVTRRQK DGRWQARIGL VAETRDIYLG TFKTEEEAAE AYDIAAIEIR  180
GKNAVTNFDR SNYVDKGMHC IEGEGLRLLA SKPE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1118139RRRSSCFSRGASIYRGVTRRQK
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo002151.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9574601e-154EU957460.1 Zea mays clone 1593084 protein BABY BOOM 2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953856.12e-78AP2-like ethylene-responsive transcription factor AIL1
TrEMBLK3YTI54e-77K3YTI5_SETIT; Uncharacterized protein
STRINGSi017580m6e-78(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118882933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.14e-31AP2 family protein