PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do002349.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

bHLH

Protein Properties

Length: 351aa MW: 37099.5 Da PI: 5.7474

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do002349.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.9	8.7e-09	166	213	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k + Ka +L + ++Y++sLq Do002349.1 166 SHSLAERVRREKISQRMKFLQDLVPGC----NKVVGKALMLDEIINYVQSLQ 213 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	3.82E-10	160	217	No hit	No description
SuperFamily	SSF47459	7.07E-17	160	231	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.6E-17	162	230	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.123	162	212	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.5E-6	166	213	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.4E-9	168	218	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence Send to blast
MDSDYVASLL MGHSAAPGLD FAALDGGFLD TLCGGGSLFG LPGVAAGGGG SGGSPEGSSV 60 SDPAWARARD GGNARKRKAP PAGAAGGKEA AGLGKAGEAK GPDGKKGRVG AGDSTVKPKV 120 EEATASDGSV EDKGQKKGKG KSSKPPVEPP KDYVHVRARR GQATDSHSLA ERVRREKISQ 180 RMKFLQDLVP GCNKVVGKAL MLDEIINYVQ SLQQQVEFLS MKLATVNPQL DFSNLSTLLH 240 KDMYQACGPS LNSVFPLESA GAAFPFCDQA DLFQSFGSGG MQDQCYLRLL ETALPHTTNP 300 QFAFQKQQRD FWEEDLQNTL PIVNEQSQEE NGISVPNFDG QLQADQTKAE V

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence Send to blast

MDSDYVASLL MGHSAAPGLD FAALDGGFLD TLCGGGSLFG LPGVAAGGGG SGGSPEGSSV  60
SDPAWARARD GGNARKRKAP PAGAAGGKEA AGLGKAGEAK GPDGKKGRVG AGDSTVKPKV  120
EEATASDGSV EDKGQKKGKG KSSKPPVEPP KDYVHVRARR GQATDSHSLA ERVRREKISQ  180
RMKFLQDLVP GCNKVVGKAL MLDEIINYVQ SLQQQVEFLS MKLATVNPQL DFSNLSTLLH  240
KDMYQACGPS LNSVFPLESA GAAFPFCDQA DLFQSFGSGG MQDQCYLRLL ETALPHTTNP  300
QFAFQKQQRD FWEEDLQNTL PIVNEQSQEE NGISVPNFDG QLQADQTKAE V

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. {ECO:0000269\|PubMed:23161888}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do002349.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025804696.1	0.0	transcription factor BHLH089-like
Swissprot	Q9CAA9	2e-55	BH049_ARATH; Transcription factor bHLH49
TrEMBL	A0A1E5VJM0	0.0	A0A1E5VJM0_9POAL; Transcription factor bHLH49
STRING	Pavir.Ba01626.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP919	38	137

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.2	5e-54	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Tian C, et al. An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation. Mol. Syst. Biol., 2014. 10: p. 755 [PMID:25358340] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]