PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do002532.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

NF-YA

Protein Properties

Length: 193aa MW: 21304.3 Da PI: 7.4189

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do002532.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	104.4	9.9e-33	87	143	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RRq+Rak+e+e+kl k+rkpylheSRh+hAl+R+Rg gGrF Do002532.1 87 EEPVYVNAKQYNAILRRRQSRAKAESERKL-VKGRKPYLHESRHQHALKRARGAGGRF 143 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	4.0E-35	85	146	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	36.53	86	146	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	4.5E-27	88	143	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	1.4E-23	89	111	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	91	111	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	1.4E-23	120	143	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 193 aa Download sequence Send to blast
EGIMTSVVHS VSDHRAEDQQ QKQPEPEDQQ EAPVTSSDSQ PTAQYAYPNI DPYYGSLYAA 60 YGGQPMMHPP LVGMHPTGLL LPTDAIEEPV YVNAKQYNAI LRRRQSRAKA ESERKLVKGR 120 KPYLHESRHQ HALKRARGAG GRFLNSKSDE KEENSDSSHK EKQNGVAPHE SSQPSTPPSP 180 NGASSANQAD SHK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	7e-21	86	150	1	65	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do002532.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU969919	1e-176	EU969919.1 Zea mays clone 337251 nuclear transcription factor Y subunit A-7 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004963231.1	1e-122	nuclear transcription factor Y subunit A-7
Swissprot	Q84JP1	2e-44	NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBL	A0A1E5VQX2	1e-139	A0A1E5VQX2_9POAL; Nuclear transcription factor Y subunit A-7 (Fragment)
STRING	Si023231m	1e-121	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6555	38	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30500.2	1e-37	nuclear factor Y, subunit A7

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]