PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do002645.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family HSF
Protein Properties Length: 407aa    MW: 42435.3 Da    PI: 5.1535
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do002645.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.89.7e-35361272102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d++++++isw+++g++f+v+ + efa+++Lp yFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ F++g+k+ll++i+
    Do002645.1  36 FLTKTYQLVDDPAVDDVISWNDDGSAFIVWRPAEFARDLLPMYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANDCFRRGEKRLLCDIH 123
                   9*****************************************************************99.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
    Do002645.1 124 RRKV 127
                   *986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.0E-3728120IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.8E-5832125IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.13E-3433125IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004475.3E-3136125IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.8E-203659IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.8E-207486IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407599IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.8E-208799IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MAAEQAAAAA TGSEPQPAEG VAPPSAAGQR SVPTPFLTKT YQLVDDPAVD DVISWNDDGS  60
AFIVWRPAEF ARDLLPMYFK HNNFSSFVRQ LNTYGFRKIV PDRWEFANDC FRRGEKRLLC  120
DIHRRKVTPA AAAATGAATV TVAAAAVPMA LPVGSPVYSG EEQVLSSSSS PDPPSLQPSG  180
SGSGGGGAAS GGGGGDAGEE NDRLRRENAR LARELSQMKK LCNNILLLMS KYAATQQLDA  240
TAQQVSAKAA AAGNNCSGEL SDAAATPPPL PSVLELLPSC RGAPASAEPP SEAAAGLECV  300
EVEEDKAGAR LFGVSIGRKR MRVDGCSNGD AGGVEDPVNR AAAEVVKAEP MDAQAGHHQQ  360
EQLEPPQAWP IYRPRPVYHP LRAGCNGSAA SSAGSDRDGS NSSRSML
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-262412818131Heat shock factor protein 1
5d5v_B3e-262412818131Heat shock factor protein 1
5d5v_D3e-262412818131Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo002645.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822703.11e-177heat stress transcription factor B-2b-like
SwissprotQ6Z9C81e-147HFB2B_ORYSJ; Heat stress transcription factor B-2b
TrEMBLA0A1E5W1I20.0A0A1E5W1I2_9POAL; Heat stress transcription factor B-2c
STRINGGRMZM2G164909_P011e-159(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.11e-57HSF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Xiang J, et al.
    Heat shock factor OsHsfB2b negatively regulates drought and salt tolerance in rice.
    Plant Cell Rep., 2013. 32(11): p. 1795-806
    [PMID:23949687]