PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do002743.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family TCP
Protein Properties Length: 233aa    MW: 25136.9 Da    PI: 5.3458
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do002743.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP111.89.4e-3572138369
         TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssss 69 
                  ++drhski T++g RdRR+Rls+++a+ fF+Lqd+LGfdk+skt++WLl+q+kpai+ lt+ s+ s
  Do002743.1  72 FRTDRHSKIRTAQGVRDRRMRLSLDVARDFFALQDRLGFDKASKTVDWLLTQSKPAIDRLTEPSQRS 138
                 689**********************************************************984333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.4E-3373136IPR005333Transcription factor, TCP
PROSITE profilePS5136934.92273131IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MLLPPAAHLD QHYADQFFPG HGHFNSETLE AVLRPPRAAA ECEAAVVTAP LGGRNGAAAA  60
GQGHARVRKR PFRTDRHSKI RTAQGVRDRR MRLSLDVARD FFALQDRLGF DKASKTVDWL  120
LTQSKPAIDR LTEPSQRSVG GGSDAALSPP TSGAPDGSGK MRGGFVEKVG TRNSGSAFME  180
HSCELDCLVT AAPMLGEYYY AGLSEMMSNN GGEGDDDGEY EEDGDDFLDG MQY
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo002743.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804518.11e-127transcription factor TB1-like
TrEMBLA0A1E5UTQ51e-171A0A1E5UTQ5_9POAL; Uncharacterized protein
STRINGPavir.Ba01820.1.p1e-108(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40523172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18550.16e-28TCP family protein