PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do002847.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family Trihelix
Protein Properties Length: 161aa    MW: 16965.2 Da    PI: 12.3539
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do002847.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix35.62.4e-112702286
    trihelix 22 rrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
                r+g+l ++ W++v++++        +   +s +qC++k+e+l+kry++++ ++ +r+++   ++++f  l+
  Do002847.1  2 RKGNLWAANWDDVANAVtarcgrFPTATPKSGVQCRHKIEKLRKRYRAERSRSAGRSKG--PKWQFFPLLH 70
                667888899********998888788899*************************98443..47****9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138379.3E-13471No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
LRKGNLWAAN WDDVANAVTA RCGRFPTATP KSGVQCRHKI EKLRKRYRAE RSRSAGRSKG  60
PKWQFFPLLH DLAGGGVPAP AQTPSSRSRP RGRGGGGEGG AEAARGRSRG GGGEGGARAG  120
GAGAARGKRA TRRDAMELMG GRRRVMSKRV RHGGPGLSEG E
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo002847.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0433261e-101BT043326.1 Zea mays full-length cDNA clone ZM_BFc0158M15 mRNA, complete cds.
GenBankEU9427171e-101EU942717.1 Zea mays clone 1532102 mRNA sequence.
GenBankEU9658481e-101EU965848.1 Zea mays clone 289347 hypothetical protein mRNA, complete cds.
GenBankKJ7278561e-101KJ727856.1 Zea mays clone pUT5902 trihelix transcription factor (THX28) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025798156.19e-48trihelix transcription factor ASIL1
TrEMBLA0A1E5WKE01e-106A0A1E5WKE0_9POAL; Uncharacterized protein (Fragment)
STRINGPavir.Ia02237.1.p1e-47(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56893250
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.28e-12Trihelix family protein