PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do002859.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family Trihelix
Protein Properties Length: 256aa    MW: 26884.1 Da    PI: 4.537
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do002859.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix38.14e-1211455287
    trihelix 52 ekwenlnkrykkikegekkrtsessstcpyfdqlea 87
                +kwen+nk++kk+ke++kkr +e+s+tcpy++ql+a
  Do002859.1 11 DKWENINKYFKKVKESNKKR-PEDSKTCPYYHQLDA 45
                8******************8.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.8E-61146No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MRNMDEADWV DKWENINKYF KKVKESNKKR PEDSKTCPYY HQLDALYRSK ALASSGAGAV  60
GAAAPPPPRL EQAGVTVLAA VPLSQTAPHA EHGGKDRSNG NGCASRGSSD NGGSSGGMQT  120
QPSNGGVAAR FTVVEGGGGN GVATNKQEGI ITKETAAMEP RPQPVSMNDS YVNDTMDSDS  180
SMDDDDEDDF DDDDEEEGNA VGGGNSKMQY EIQFQQRQQQ IQSSVVRPNA SGGAGSGPGP  240
GPAATTSGSF LTMVHH
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo002859.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2167604e-54AC216760.1 Oryza minuta clone OM__Ba0212D22, complete sequence.
GenBankAC2172024e-54AC217202.1 Oryza punctata clone OP__Ba0068C08, complete sequence.
GenBankAC2260724e-54AC226072.1 Oryza minuta clone OM__Ba0051J08, complete sequence.
GenBankAC2329024e-54AC232902.1 Oryza officinalis clone OO__Ba0128B10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004986013.16e-81trihelix transcription factor GTL1 isoform X2
TrEMBLA0A1E5UT771e-180A0A1E5UT77_9POAL; Uncharacterized protein (Fragment)
STRINGSi034382m1e-79(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60638175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.13e-20Trihelix family protein