PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do002986.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family LSD
Protein Properties Length: 87aa    MW: 9292.08 Da    PI: 8.3808
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do002986.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD143.84.2e-142751125
     zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                C gCr+lL+YP+GA+sV+Ca+C tV
  Do002986.1 27 CTGCRNLLMYPAGATSVCCAVCSTV 51
                9**********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010532.4E-132454IPR005735Zinc finger, LSD1-type
PfamPF069433.3E-112751IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0034051Biological Processnegative regulation of plant-type hypersensitive response
GO:0045595Biological Processregulation of cell differentiation
Sequence ? help Back to Top
Protein Sequence    Length: 87 aa     Download sequence    Send to blast
MPVPLAPYPT PPVPFTPPNG AQSQLVCTGC RNLLMYPAGA TSVCCAVCST VTAVPAPGLT  60
WCRAEAQHMM FLKILRSPMK ADSERML
Functional Description ? help Back to Top
Source Description
UniProtNegative regulator of programmed cell death and hypersensitive response (HR). Positive regulator of callus differentiation. {ECO:0000269|PubMed:15915636}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo002986.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. Down-regulated by dark. {ECO:0000269|PubMed:15915636}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0670119e-56BT067011.1 Zea mays full-length cDNA clone ZM_BFb0148P15 mRNA, complete cds.
GenBankBT0843809e-56BT084380.2 Zea mays full-length cDNA clone ZM_BFb0107G11 mRNA, complete cds.
GenBankEU9729829e-56EU972982.1 Zea mays clone 391080 LOL1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002445097.13e-33protein LSD1
RefseqXP_004972784.23e-33protein LSD1
RefseqXP_022683193.13e-33protein LSD1
RefseqXP_025820445.13e-33protein LSD1
RefseqXP_025820446.13e-33protein LSD1
RefseqXP_025820447.13e-33protein LSD1
RefseqXP_025820449.13e-33protein LSD1
SwissprotQ0J7V96e-34LSD1_ORYSJ; Protein LSD1
TrEMBLA0A1E5UV213e-56A0A1E5UV21_9POAL; Uncharacterized protein
STRINGPavir.Fa01884.1.p1e-32(Panicum virgatum)
STRINGPavir.J14727.1.p6e-33(Panicum virgatum)
STRINGORUFI08G03990.22e-32(Oryza rufipogon)
STRINGSi014603m1e-32(Setaria italica)
STRINGSb07g004050.11e-32(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134738124
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]