PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do003038.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 253aa    MW: 27282.8 Da    PI: 7.9032
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do003038.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.51.8e-1193138454
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 +h e+Er+RR+r+N  f  Lr  +P+       +++ a+ L  Av YI +L
  Do003038.1  93 SHVEAERQRRERLNRLFCDLRAAVPTV-----SRMDRASLLSDAVAYIAEL 138
                 799***********************6.....49**************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.989138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.26E-1491158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.20E-1093139No hitNo description
PfamPF000105.4E-993138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-1393157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-995144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MDQLVWPASF CGPPSPASFF SAVGNHQYPA LEFQSCDDVA DQWLAAGDDV LNENDDSEPR  60
DAGANPPSSA PPLAKRRKRG RKAGPRTARP TISHVEAERQ RRERLNRLFC DLRAAVPTVS  120
RMDRASLLSD AVAYIAELRG RVVQLEEAEA EARRTIAASV SRGAPEQENI ALEARMVGRA  180
EAALRLTTTA SRHAPARLMA ALRALDLPVQ HACVCRVGGV TVQDVVVDVP SAGLRGEGRL  240
RAALLHVSLQ ESG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A5e-1892146761Transcription factor MYC2
5gnj_B5e-1892146761Transcription factor MYC2
5gnj_E5e-1892146761Transcription factor MYC2
5gnj_F5e-1892146761Transcription factor MYC2
5gnj_G5e-1892146761Transcription factor MYC2
5gnj_I5e-1892146761Transcription factor MYC2
5gnj_M5e-1892146761Transcription factor MYC2
5gnj_N5e-1892146761Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
198103RQRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo003038.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0973416e-50FP097341.1 Phyllostachys edulis cDNA clone: bphylf031p01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002444643.14e-81transcription factor bHLH14
TrEMBLA0A1E5VZQ01e-180A0A1E5VZQ0_9POAL; Uncharacterized protein
STRINGSb07g025310.12e-80(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89333130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32640.18e-18bHLH family protein