PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do003086.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family GeBP
Protein Properties Length: 436aa    MW: 46773.2 Da    PI: 10.0098
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do003086.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57391.11.3e-28184281297
      DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 
                 +++rlws  De+v+L+Gl +++ak+g+   +++d+ ++   +++ +s++v+ +q+++K+rrLK+K++   ++ak+g++p++ ++hd++++e+sk++Wg
  Do003086.1 184 RPSRLWSPADELVILRGLATYRAKRGVlpGSMHDMAKLLGHIQGDLSVQVTPTQVSDKVRRLKQKYNLFASRAKNGRDPDLPTPHDHSVYEVSKRVWG 281
                 679************************877888****************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045042.6E-26186281IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MAPKRPAAAQ SGSASEASDA EADAPLRHPS SPSPSKTPPP PPNPNPKSSS AAAAPASAAE  60
DSAAAGSDSA AAYDSDADHR PALRKPGASA SPPRKRRSPL TRSRSRSPDA ASDSDADPAA  120
GDSADDGNAS PLPPPRPSRP EAAAIKPLSS RPMDPPRRSM LVPSFAEPRP KRPRTAASVE  180
QLKRPSRLWS PADELVILRG LATYRAKRGV LPGSMHDMAK LLGHIQGDLS VQVTPTQVSD  240
KVRRLKQKYN LFASRAKNGR DPDLPTPHDH SVYEVSKRVW GAIADAGGGS TAGDGYEIGG  300
GGGGESEEER EIAESDDDVD SGRDDRARKN RRLRPITMAN GNMAGFGAVN DNSRGKFDFE  360
KGKDAYPYLW ETVEDLSKEH LNGVAFKKAF ELIQGPKARG MEEKLRKFRL TEIRHQLRRM  420
ELMKETVKMV LDALEG
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo003086.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004956982.10.0STOREKEEPER protein
TrEMBLA0A1E5UMV70.0A0A1E5UMV7_9POAL; Uncharacterized protein
STRINGSb02g026310.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26713587
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00390.13e-13DNA-binding storekeeper protein-related transcriptional regulator