PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do003167.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family HSF
Protein Properties Length: 368aa    MW: 39953.1 Da    PI: 4.9393
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do003167.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind96.23.5e-30711612101
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl k++e++ed++++ ++sw +  nsfvv+d++ fa  +Lp+ Fkh nf+ F+RQLn+YgF+kv+ ++         weF+h  F +g+++ll++i+
    Do003167.1  71 FLAKTFELVEDPATDGVVSWGAARNSFVVWDPHAFAAGLLPSRFKHANFSTFLRQLNTYGFRKVSPDR---------WEFAHADFLAGQRHLLTNIR 158
                   9********************999******************************************99.........******************** PP

                   XXX CS
  HSF_DNA-bind  99 rkk 101
                   r++
    Do003167.1 159 RRR 161
                   *97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467852.99E-3066160IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.6E-5067160IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.107.4E-3368160IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.2E-157194IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.4E-2771160IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-15109121IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-15122134IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MSPAKAPTHA PAHVRNELVA APLAVLRRME HPAAVTIKQE EDEVVVVVLD TDGVPAPEPW  60
QTPAASAVPP FLAKTFELVE DPATDGVVSW GAARNSFVVW DPHAFAAGLL PSRFKHANFS  120
TFLRQLNTYG FRKVSPDRWE FAHADFLAGQ RHLLTNIRRR RGAAGGPSTV SATASGAKTG  180
ATGSANREGE LERLRRDREA LARELTRLRR WQQEARAQLL DMERRVRGTE RRQEQCTAFL  240
ARAVGNPAFL EGLLARRGLA APVVDAGRKR PLLDAAADVL AIEELALAAG AEVEAAPVPA  300
VMTSQSSSTA TTTDMIWYEL LGEEQVEIDA EVEELVAAAA AVEAAEPWEE MGDEEVEELV  360
QQIGCPVK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hdg_A4e-24681607110Heat shock factor protein 1
5hdn_A4e-24681607110Heat shock factor protein 1
5hdn_B4e-24681607110Heat shock factor protein 1
5hdn_C4e-24681607110Heat shock factor protein 1
5hdn_D4e-24681607110Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1192197RLRRDR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo003167.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3727016e-85AK372701.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3009M23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001356225.11e-151heat shock factor protein HSF30
SwissprotQ5Z6A41e-99HFA6A_ORYSJ; Putative heat stress transcription factor A-6a
TrEMBLA0A1E5VBN60.0A0A1E5VBN6_9POAL; Putative heat stress transcription factor A-6a
STRINGGRMZM2G173090_P011e-151(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.12e-55heat shock transcription factor A2