PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do003174.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family M-type_MADS
Protein Properties Length: 252aa    MW: 26426 Da    PI: 6.5195
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do003174.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF528.8e-1741761045
                HHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
      SRF-TF 10 qvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                +v fskRr g++KKA EL vLC+a vav +fs+ gk
  Do003174.1 41 HVCFSKRRGGLFKKAAELAVLCGAHVAVTVFSHAGK 76
                799*******************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554551.31E-212394IPR002100Transcription factor, MADS-box
SMARTSM004321.7E-202383IPR002100Transcription factor, MADS-box
PROSITE profilePS5006619.4692384IPR002100Transcription factor, MADS-box
CDDcd002655.19E-312495No hitNo description
PfamPF003191.8E-194179IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MEEAAERRRG GEAGGERKRK KTLGRQKIQI KTIERPVEAW HVCFSKRRGG LFKKAAELAV  60
LCGAHVAVTV FSHAGKPYSL GHPSVNTVVD RYLDPASASG AGAAAAGEGE ATLPAMLCEF  120
ASESERLDEA IKVEARRRKA IDAEARAAGV RASDDDLRGA GSPYLLAMLA ALERVQAEAE  180
AIFEEEMMQQ FAATSSGGNV SGAIGYPGAG AFAADGGGSS SHQGVMDTQP MLMGGDINHA  240
PMPYAPVMML PP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1620RRRGGEAGGERKRKK
21620RKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo003174.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813008.19e-75MADS-box protein AGL71-like
TrEMBLA0A1E5VBG00.0A0A1E5VBG0_9POAL; Uncharacterized protein
STRINGPavir.Da00770.1.p3e-62(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133092432
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.13e-22AGAMOUS-like 61