PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do003214.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family C3H
Protein Properties Length: 119aa    MW: 12365 Da    PI: 10.2574
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do003214.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.22.7e-08951101227
                 TS--TTTTT-SS-SSS CS
     zf-CCCH  12 tGtCkyGdrCkFaHgp 27 
                 +G C +GdrC+FaHg+
  Do003214.1  95 SGSCTFGDRCHFAHGE 110
                 69************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF547911.61E-142093IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.101.3E-152091IPR004088K Homology domain, type 1
SMARTSM003221.7E-92292IPR004087K Homology domain
PROSITE profilePS5008414.6342387IPR004088K Homology domain, type 1
PfamPF000132.3E-112588IPR004088K Homology domain, type 1
CDDcd001056.75E-122587No hitNo description
SuperFamilySSF902294.87E-694115IPR000571Zinc finger, CCCH-type
PfamPF006429.4E-695110IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-1095116IPR000571Zinc finger, CCCH-type
PROSITE profilePS501039.21696111IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 119 aa     Download sequence    Send to blast
MDATRKRGAP EGANGAGGPK RARATAKISV DASLAGGIIG KGGTNTKHIS RVTGAKLAIR  60
DNEADPNLKN IELEGTFDQI KHASAMVTEL IVRISGSCTF GDRCHFAHGE SELRKPAAA
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo003214.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0635372e-73BT063537.1 Zea mays full-length cDNA clone ZM_BFc0074M08 mRNA, complete cds.
GenBankBT0639252e-73BT063925.1 Zea mays full-length cDNA clone ZM_BFc0120K02 mRNA, complete cds.
GenBankBT0878742e-73BT087874.1 Zea mays full-length cDNA clone ZM_BFb0279J08 mRNA, complete cds.
GenBankEU9525982e-73EU952598.1 Zea mays clone 1284141 mRNA sequence.
GenBankEU9680082e-73EU968008.1 Zea mays clone 312808 zinc finger C-x8-C-x5-C-x3-H type family protein mRNA, complete cds.
GenBankJX4284912e-73JX428491.1 Zea mays subsp. mays clone pUT3088 C3H18 C3H type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004965878.12e-54zinc finger CCCH domain-containing protein 44
SwissprotQ69XQ38e-55C3H44_ORYSJ; Zinc finger CCCH domain-containing protein 44
TrEMBLA0A1E5UYV93e-80A0A1E5UYV9_9POAL; Zinc finger CCCH domain-containing protein 44
STRINGPavir.Db00748.1.p1e-53(Panicum virgatum)
STRINGPavir.J02805.1.p1e-53(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.13e-30C3H family protein