PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do003424.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

C3H

Protein Properties

Length: 166aa MW: 18131.5 Da PI: 8.3782

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do003424.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23	1.4e-07	82	100	9	27
GGGTS--TTTTT-SS-SSS CS zf-CCCH 9 fartGtCkyGdrCkFaHgp 27 f+ GtCkyGd+C++ H++ Do003424.1 82 FMLQGTCKYGDSCRYFHPK 100 8999*************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00451	2.4E-6	3	38	IPR003604	Zinc finger, U1-type
SuperFamily	SSF57667	4.72E-16	4	48	No hit	No description
Pfam	PF06220	5.0E-11	5	37	IPR013085	Zinc finger, U1-C type
PROSITE profile	PS50103	11.657	60	101	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.6E-4	82	98	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.8E-5	82	100	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 166 aa Download sequence Send to blast
MPLGKYYCDY CDKQFQDTPA ARKRHLQGTQ HQRARALWYD SVRHQDQHGG ASSLLLPDGT 60 LAKGVCHHFV RTAALDFDAN PFMLQGTCKY GDSCRYFHPK PGGANPSLAA PGKGLGQKFD 120 IGNVSFLCHV FTGNVLGAHT SWGNLPPSLQ PPPEGGYPPL PLVDWG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do003424.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ727992	1e-77	KJ727992.1 Zea mays clone pUT6112 C3H transcription factor (C3H42) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004967856.1	5e-87	zinc finger CCCH domain-containing protein 3
Swissprot	Q0JP11	3e-57	C3H3_ORYSJ; Zinc finger CCCH domain-containing protein 3
TrEMBL	A0A1E5UQJ8	1e-119	A0A1E5UQJ8_9POAL; Zinc finger CCCH domain-containing protein 3
STRING	Pavir.Eb00973.1.p	2e-87	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12617	23	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26749.1	2e-24	C3H family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]