PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do003563.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 160aa    MW: 17993.3 Da    PI: 8.9191
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do003563.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.87.1e-12861261055
                 HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 ++RR+riN+++ +L++l+P+      +K++ +++Le+Av+Y+k Lq
  Do003563.1  86 KKRRERINEKLKTLQQLIPNG-----TKVDMSTMLEEAVQYVKFLQ 126
                 9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.57E-1573141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.4E-1574139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.47276125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-1182131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.17E-1085130No hitNo description
PfamPF000102.3E-986126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
LIDGCRKESK NSNKKPRNIA PVLRTLSSSA LDDETNTELI NNSSSWCCSS EDDSIGVCEE  60
SVVLKQSSSS RGRSRSSKNS QSLYAKKRRE RINEKLKTLQ QLIPNGTKVD MSTMLEEAVQ  120
YVKFLQLQIK LLSSDETWMY APLAYNHMSI DINLNSAAKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo003563.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025826894.12e-83transcription factor bHLH139-like isoform X1
RefseqXP_025826895.15e-84transcription factor bHLH54-like isoform X2
RefseqXP_025826896.15e-84transcription factor bHLH54-like isoform X2
RefseqXP_025826897.15e-84transcription factor bHLH54-like isoform X2
SwissprotQ7XHI92e-39BH084_ARATH; Transcription factor bHLH84
TrEMBLA0A1E5V4V31e-112A0A1E5V4V3_9POAL; Transcription factor bHLH84 (Fragment)
STRINGSi028242m8e-82(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140022528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.12e-37bHLH family protein