PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do003610.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family M-type_MADS
Protein Properties Length: 191aa    MW: 21304.3 Da    PI: 6.531
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do003610.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF663.8e-211659144
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                krienk  rqv fskRr+g++KKA+ELS+LC+a v  ++fs+ g
  Do003610.1 16 KRIENKKARQVCFSKRRQGLFKKASELSILCGAMVGTVVFSEAG 59
                79***************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.0E-25868IPR002100Transcription factor, MADS-box
PROSITE profilePS5006622.708859IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.68E-24982IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-161030IPR002100Transcription factor, MADS-box
PfamPF003191.7E-231760IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-163045IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-164566IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MVKPNTSKGK KEVEIKRIEN KKARQVCFSK RRQGLFKKAS ELSILCGAMV GTVVFSEAGS  60
RSFSFGHPSI DDVVNRFLSP VTPDVPASGG ASHDNGGLVT DTVHELNIEY LELEQSLESE  120
KKRKERLQEA IEKEMGEPMM RWLNANILEL GLDELQEFQK KLEEIDGIVK EVNKALVEGR  180
QTPGSHAVPA W
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo003610.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012699030.11e-102agamous-like MADS-box protein AGL29
TrEMBLA0A1E5USG51e-137A0A1E5USG5_9POAL; Uncharacterized protein
STRINGSi032189m1e-101(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122436128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-23AGAMOUS-like 62