PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do003616.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ERF
Protein Properties Length: 198aa    MW: 21176.6 Da    PI: 5.5572
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do003616.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP226.71.4e-08102127229
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrk 29 
                 +++GVr+++ +grW+AeIrdp  +g+rk
  Do003616.1 102 RVRGVRRRP-WGRWAAEIRDPQ-RGRRK 127
                 69*******.**********83.33334 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103211.179102129IPR001471AP2/ERF domain
PfamPF008475.9E-5102127IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-5103128IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.8E-7104127IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MDPTSLKEEM KAAAEVGEGE VEEVKEVARA AAAAAAAAAP RCRVVRIIVH DEDATDSSSS  60
EDEDEEEEEE GEAVSVKRSR VLLQTGGGGE EEEEAATAEG VRVRGVRRRP WGRWAAEIRD  120
PQRGRRKRLP SPPPPPESWK QGAAVSSTSS PPKPKPTPFV PQPVWALLSG KRKKRSGSGC  180
GGRVPALRTP AAEEASRA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1106127RRRPWGRWAAEIRDPQRGRRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo003616.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001147110.24e-18membrane protein
TrEMBLA0A3L6QWJ82e-19A0A3L6QWJ8_PANMI; Ethylene-responsive transcription factor CRF1-like
STRINGGRMZM2G009598_P012e-17(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2281033