PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do003836.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

YABBY

Protein Properties

Length: 258aa MW: 27559.5 Da PI: 7.6943

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do003836.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	193.6	9e-60	27	218	6	170
YABBY 6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee.........lleelkveeenlksnvekeesasts 95 eq+Cyv+C+ C+tilav vP +s fk+vtvrCGhC++llsvnl+ l aa+++l +++ ll+e+ ++ +l s + +++ st Do003836.1 27 EQEQLCYVHCKCCDTILAVGVPCSSFFKTVTVRCGHCSNLLSVNLRGLL-LPAATNQLPFGGQQAllsptsphgLLDEMAFQAPSLPSAEPPSTCVSTI 124 679***************************************99875.3344555555444445566788896666666666666666555555555 PP YABBY 96 vssekl..................senedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 +s ++ + ++ ++p+ ++P ekrqrvPsaynrfik+eiqrikasnPdi+hreafsaaaknWahfP+ihfgl Do003836.1 125 TSINNScggnnnasvmsmappvvkPAPQEPQLPKSAAsGNKPTEKRQRVPSAYNRFIKDEIQRIKASNPDITHREAFSAAAKNWAHFPHIHFGL 218 555444555555556666777777667777788776658***************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	4.8E-67	27	218	IPR006780	YABBY protein
SuperFamily	SSF47095	7.46E-8	157	211	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	1.9E-4	168	210	IPR009071	High mobility group box domain
CDD	cd00084	7.74E-5	172	208	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
MMSSVPETFA QLDQHLAPPP PPQQPAEQEQ LCYVHCKCCD TILAVGVPCS SFFKTVTVRC 60 GHCSNLLSVN LRGLLLPAAT NQLPFGGQQA LLSPTSPHGL LDEMAFQAPS LPSAEPPSTC 120 VSTITSINNS CGGNNNASVM SMAPPVVKPA PQEPQLPKSA ASGNKPTEKR QRVPSAYNRF 180 IKDEIQRIKA SNPDITHREA FSAAAKNWAH FPHIHFGLMP DQALKKTSIQ NQEGGECMLF 240 KDGLYAAAAA SGMGIAPF

Functional Description ? help Back to Top
Source	Description
UniProt	May be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000250}.
UniProt	May be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000269\|PubMed:17351053}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do003836.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by WOX3. {ECO:0000269\|PubMed:17351053}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT035706	1e-159	BT035706.1 Zea mays full-length cDNA clone ZM_BFb0078M02 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004976365.1	1e-154	protein YABBY 5
Swissprot	Q01JG2	1e-115	YAB5_ORYSI; Protein YABBY 5
Swissprot	Q0JBF0	1e-115	YAB5_ORYSJ; Protein YABBY 5
TrEMBL	A0A1E5W2F0	0.0	A0A1E5W2F0_9POAL; Protein YABBY 5
STRING	Si010859m	1e-153	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1445	38	121

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45190.1	2e-56	YABBY family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Khanday I, et al. Genome-Wide Targets Regulated by the OsMADS1 Transcription Factor Reveals Its DNA Recognition Properties. Plant Physiol., 2016. 172(1): p. 372-88 [PMID:27457124]