PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do003874.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 283aa    MW: 30104.1 Da    PI: 7.0783
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do003874.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.42.5e-08133177554
                 HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 h+++Er RR+ri +++  L+el+P+       K + a++L +  +Y+k L
  Do003874.1 133 HSIAERLRRERIAERMRALQELVPNT-----NKIDRAAMLDEILDYVKFL 177
                 99***********************7.....5****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.29E-15126187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.50E-10126182No hitNo description
PROSITE profilePS5088815.491128177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.4E-14130188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.8E-6133177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.5E-9134183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0031347Biological Processregulation of defense response
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MAGQPPQGPE DDFLDQFFSM AGGSYSAAAA GGGRAAGDQP FSLALSLDAA AAEASGSGKH  60
AEGGKADREA VQLPGLFPPV FGSGVQPPHL RPNPPSQVFH AQQPKQGGVA VGPQPPAPRP  120
KVRARRGQAT DPHSIAERLR RERIAERMRA LQELVPNTNK IDRAAMLDEI LDYVKFLRLQ  180
VKVLSMSRLG GAGAVAQLVA DIPLSVKGEA SDSGSKQQIW EKWSTDGTER QVAKLMEEDI  240
GAAMQFLQSK ALCMMPISLA MAIYDTQHSQ DGQPVKPEPN TPS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1137142RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo003874.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9734110.0EU973411.1 Zea mays clone 398294 BHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001152044.10.0uncharacterized protein LOC100285681
SwissprotO227683e-75UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A1E5WG190.0A0A1E5WG19_9POAL; Transcription factor UNE12
STRINGGRMZM2G004356_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26563580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.35e-54bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]