PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do003887.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ERF
Protein Properties Length: 200aa    MW: 20608.8 Da    PI: 8.4709
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do003887.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.72.8e-181867255
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                +y+GVr ++ +gr++AeIrdp    k++ ++lg+f++ae Aa+a++aa+++l+g
  Do003887.1 18 RYRGVRKRP-SGRYAAEIRDPA---KKTPIWLGTFDSAEAAARAYDAAARSLRG 67
                59*******.7*********83...36*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.0E-111867IPR001471AP2/ERF domain
SMARTSM003803.2E-331881IPR001471AP2/ERF domain
CDDcd000189.22E-161874No hitNo description
PROSITE profilePS5103221.971875IPR001471AP2/ERF domain
SuperFamilySSF541715.62E-211875IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.9E-291876IPR001471AP2/ERF domain
PRINTSPR003678.7E-81930IPR001471AP2/ERF domain
PRINTSPR003678.7E-84157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MRRAKPPQPQ PSPSPEIRYR GVRKRPSGRY AAEIRDPAKK TPIWLGTFDS AEAAARAYDA  60
AARSLRGPTA RTNFPSAAAS APPRRRAAPS AAAAASAAAA AAAAAATSSL SSTVESWSGG  120
ATRAAAALAR SAVPTTEEED DEDCRSYCGS SSSVLCEDGG GDDAAASRAP LPFDLNLPPP  180
HDVAAEADQM GARYDTLLRL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1818761473Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo003887.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021306174.15e-79ethylene-responsive transcription factor 3
TrEMBLA0A1E5W6B31e-133A0A1E5W6B3_9POAL; Uncharacterized protein
STRINGSb10g028110.14e-76(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61022347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15210.15e-19ethylene responsive element binding factor 4