PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do003889.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family C2H2
Protein Properties Length: 1513aa    MW: 166235 Da    PI: 6.4534
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do003889.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.0004214031428123
                  EEET..TTTEEESSHHHHHHHHHH.T CS
     zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt.H 23  
                  ++C    C+++F ++ +L+ H r+ +
  Do003889.1 1403 FQCDidLCDMTFETRAELNAHKRNiC 1428
                  899999****************9877 PP
2zf-C2H212.50.0004614281450323
                  ET..TTTEEESSHHHHHHHHHHT CS
     zf-C2H2    3 Cp..dCgksFsrksnLkrHirtH 23  
                  C+   Cgk+Fs++ +LkrH+ +H
  Do003889.1 1428 CTdeSCGKRFSSHKYLKRHQCVH 1450
                  77778***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005454.5E-122667IPR003349JmjN domain
PROSITE profilePS5118313.4812768IPR003349JmjN domain
PfamPF023754.4E-132861IPR003349JmjN domain
PROSITE profilePS5118434.798220389IPR003347JmjC domain
SMARTSM005581.6E-47220389IPR003347JmjC domain
SuperFamilySSF511976.87E-27226385No hitNo description
PfamPF023732.1E-36253372IPR003347JmjC domain
SMARTSM003553414031425IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.19614261455IPR007087Zinc finger, C2H2
SMARTSM003552.314261450IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.2E-514271455IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028014281450IPR007087Zinc finger, C2H2
SuperFamilySSF576676.15E-1014421484No hitNo description
Gene3DG3DSA:3.30.160.602.5E-1014561480IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.96714561485IPR007087Zinc finger, C2H2
SMARTSM003550.00314561480IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028014581480IPR007087Zinc finger, C2H2
SuperFamilySSF576671.13E-814741509No hitNo description
Gene3DG3DSA:3.30.160.609.6E-1014811508IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.15714861513IPR007087Zinc finger, C2H2
SMARTSM003550.7914861512IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028014881512IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009826Biological Processunidimensional cell growth
GO:0033169Biological Processhistone H3-K9 demethylation
GO:0045814Biological Processnegative regulation of gene expression, epigenetic
GO:0048577Biological Processnegative regulation of short-day photoperiodism, flowering
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0032452Molecular Functionhistone demethylase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1513 aa     Download sequence    Send to blast
MSPPPAGATG GPGEPTVPAW LRGLPRAPEY RPTESEFADP IAFLSRVERE AAAYGICKVI  60
PPYPRPSRRF VFAHLNRSLT SSDAVNPTVS GSSSSTAPAG PESAAVFTTR HQELGTPRRG  120
RPPPQVLKQV WQSGEQYTLE QFEAKSRAFS KIHLAGLREP TALEVESLFW KASADRPIYI  180
EYANDVPGSG FAAPPQSWRR KKRRREGDQV EEGEKGSGWR LSGSPWNLQA IARAPGSLTR  240
FMPDDVPGVT SPMVYIGMLF SWFAWHVEDH ELHSLNFLHT GAPKTWYAVP GDRASELEEV  300
IRVHGYGGNP DRLASLAVLG EKTTLMSPDV LVARGVPCCR LVQYPGEFVV TFPRAYHIGF  360
SHGFNCGEAA NFATPQWLKF AKEAAVRRAV MNHLPMLSHQ QLLYLLAVSF ITRTPSVLSG  420
LRMSRLRDRR KEERELLVKQ EFLQDMISEN KLLCSFLKKK SINDVVLWEP DLLPSSTALN  480
SCSSGSKAPE KKSEDSCRIE SSQCNYKDNS TSDGSVRMIG TQTKCMSGNS KSSDSASACM  540
EKPDTDIDDE DDLPFDLSID SGSLTCVACG ILGYPFMAIL QPSRETLERI SLVHRERYKL  600
SSEKENCCPA GGNFDSYGTL TNASAYVSGC SFVPNRPSCS AEQPCLATPV EQANIDHQNV  660
KSHKDVCLAE NELAGPVQQC SNSPHSCRSE NTLHSCSKRG KSDNTIPKDS LGPEVSKQTV  720
RGDIDAQAVE SCDGTINWNT SSTFARPRIF CLQHALEIEE LLEGKGGVHA LIICHSDYIK  780
LKALAISIAE EIEFQFDCTD VSLANASKSD LHLINISIDD EGHEEDGRNW TSQIGLNLKY  840
CAKLRKETSG NQEQSPLSVW GLFSNPSPVS VVPNLKWLCK KARTPYKVIG IIYSSGATAA  900
TAIAEEVKPE VKEEIGTTGY VCEDDSRQHT FQQNGLLQLS GLHDSDGRGN KHLCSESGHD  960
RHCLIDIPIA VAEYPMKHQV CEGPVNVSRC NDSICSSDSQ DSPPLATSPV DVYQGCIQSS  1020
ELSNSTTFSV QQFLNDKSTS VEGSINCLSN NEYLESQDVT LRCRDEWLQV QKDQEEMGLC  1080
NNPNRTSVDP GLKEDLVISE EKHGITVSAT LENEEGCCAK TSNCSDTVIK TNESATVNQL  1140
ENRDVGAVVK QKSSCDEMTC SADIECSITF GCLGSADVPG STQPLLVPHD LMSDELQIAS  1200
HHCVVKAIEP KSNDSAKHGS PQIDNLILED AQAASTTAIP GHDGKSVHTG SNSFDILLGA  1260
LAEESKGTDP PGKDEVGKAS LTLMTLASND HAADSKAVEV VKTDTILGAT KGGQQVDQPH  1320
DFHLSDLVSR SIGHSNRTGI ICYVRRKHKR KRVSQSNTDS SQSFGGFVRS PCESLRPRTK  1380
PAVVETMEVS AGKKGKRTKV GSFQCDIDLC DMTFETRAEL NAHKRNICTD ESCGKRFSSH  1440
KYLKRHQCVH SEIRPFKCHW DGCEMTFKWL WAQTEHVRVH TGERPYKCSA PSCGQTFRYV  1500
SDYSRHRKKF NHY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ip0_A2e-74204228373Transcription factor jumonji (Jmj) family protein
6ip4_A2e-74204228373Arabidopsis JMJ13
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1198204RRKKRRR
2198205RRKKRRRE
313441350RRKHKRK
Functional Description ? help Back to Top
Source Description
UniProtHistone demethylase that demethylates 'Lys-4' (H3K4me) of histone H3. Involved in the control of flowering time. Has a suppressive effect on floral transition under long day conditions through the demethylation of H3K4me3 in the promoter region of the flower-promoting signal HD3B/RFT1. {ECO:0000269|PubMed:24759811}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo003889.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0664780.0BT066478.1 Zea mays full-length cDNA clone ZM_BFb0002D16 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004985676.10.0lysine-specific demethylase SE14
SwissprotQ10RP40.0SE14_ORYSJ; Lysine-specific demethylase SE14
TrEMBLA0A1E5WNK40.0A0A1E5WNK4_9POAL; Lysine-specific demethylase SE14
STRINGSi033886m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP99393437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04240.11e-174C2H2 family protein