PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do003940.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family NAC
Protein Properties Length: 166aa    MW: 19014.5 Da    PI: 7.5006
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do003940.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM70.83.5e-22121421128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkk....leleevikevdiykvePwdLpk...kvkaeekewyfFskrdkkyat.gkrknr.atksgyWkatgkdk 90 
                 lp+G+rF Pt  el+++yL+  v+        e e ++  +d+y+++P +L +   ++ +++ +wyf + ++ k+ + g+r nr +   g W+ +gk  
  Do003940.1  12 LPVGYRFTPTPRELIHYYLNTWVTCPGerpfGEPEGIVCAADVYSADPGTLTSrlrHFGHDDGNWYFLCVTRWKAGNvGTRMNRtVQGGGKWHGSGKRI 110
                 799*******************9876655542223467788**********853445555777*******99999877******5555899**999977 PP

         NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                 +v +      g ++t+ +    +  g k++W+m+e+r 
  Do003940.1 111 KVRR---WPYGYRQTFEYR---DAGGDKCTWLMEEFRS 142
                 7766...89********95...78899*********95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.71E-245147IPR003441NAC domain
PROSITE profilePS5100524.99812166IPR003441NAC domain
PfamPF023651.5E-1513141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MEMEENGRWP DLPVGYRFTP TPRELIHYYL NTWVTCPGER PFGEPEGIVC AADVYSADPG  60
TLTSRLRHFG HDDGNWYFLC VTRWKAGNVG TRMNRTVQGG GKWHGSGKRI KVRRWPYGYR  120
QTFEYRDAGG DKCTWLMEEF RSALPEATDG EGIKMVPADP LSLIHI
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo003940.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025826981.15e-82NAC domain-containing protein 30-like
TrEMBLA0A1E5VXB22e-98A0A1E5VXB2_9POAL; Uncharacterized protein (Fragment)
STRINGPavir.Hb01963.1.p7e-80(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114741834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46590.17e-13NAC domain containing protein 96