PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do003945.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family NAC
Protein Properties Length: 657aa    MW: 71422.5 Da    PI: 4.3521
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do003945.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.97.9e-53241521129
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 
                 l+pGfrFhPtdeelv++yLk+kv g++l++ ++i+evd+yk+ePwdLp+  ++++++++wyfFs+ d+k+a+  r+nrat+ gyWk+tgkd+ev + + 
  Do003945.1  24 LAPGFRFHPTDEELVSYYLKRKVLGRPLKV-DAIAEVDLYKLEPWDLPArsRLRSRDSQWYFFSRLDRKHANRARTNRATSGGYWKTTGKDREVRH-GP 120
                 579***************************.99***************4357888999**************************************.99 PP

         NAM  98 elvglkktLvfykgrapkgektdWvmheyrle 129
                 + vg+kktLvf+ grapkge+t+Wvmheyrle
  Do003945.1 121 RIVGMKKTLVFHAGRAPKGERTNWVMHEYRLE 152
                 9*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.23E-6117172IPR003441NAC domain
PROSITE profilePS5100559.42324172IPR003441NAC domain
PfamPF023652.1E-2826151IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009644Biological Processresponse to high light intensity
GO:0009962Biological Processregulation of flavonoid biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 657 aa     Download sequence    Send to blast
MTHPSSSSSA PPPPAAAAAE ATSLAPGFRF HPTDEELVSY YLKRKVLGRP LKVDAIAEVD  60
LYKLEPWDLP ARSRLRSRDS QWYFFSRLDR KHANRARTNR ATSGGYWKTT GKDREVRHGP  120
RIVGMKKTLV FHAGRAPKGE RTNWVMHEYR LEGDEAAGIP QDSFVVCRIF QKAGPGPQNG  180
AQYGAPFVEE EWEEDDEDVG LLPVGADTVV DHEVPPGPKE APGALEKGYL QMSDLIQGLG  240
DQNGNGTIGL PVSDTSNNSN HSEEVDGNSG DILSDVNLGS NYLQYVEPGE QNNLMLNENM  300
VSNANAGDFF NNSSPSDGFL ELKDFADAAN LDYPSIWPSD GWAWRTPDNL EAVNGGNNDI  360
PPLPDDQTFQ PDELEQLLQS IQEDSHLGSS IIDPSHSSIT NSVMPEDDSV MFYDAPFDST  420
MCDDGFRQMN GILGSPANLS GIGMVDDGMP YYDAMDDNLF NDILGSIQQP AGSSSHVFNG  480
PVLTQEVNNT MYTCSPTQKV LEPNFVVGAP SSARLPEAGS QFNCVVLPDG QAKSSTLGKR  540
FVKILDSISA PPAFASEFPA NLRKSLAPIS GARPNTFHVS AEVISIGSLA VASGPDKWAL  600
QKDQGMELLF TDFEPDTRMH CGCNTVTTVL RGGFCLVFFS AIMLLVSYEV GMCIYGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-47191729168Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00059PBMTransfer from AT5G04410Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo003945.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0639170.0BT063917.1 Zea mays full-length cDNA clone ZM_BFc0120A04 mRNA, complete cds.
GenBankKJ7280190.0KJ728019.1 Zea mays clone pUT6155 NAC transcription factor (NAC12) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025820240.10.0NAC domain-containing protein 53-like
TrEMBLA0A1E5WL630.0A0A1E5WL63_9POAL; NAC domain-containing protein 78
STRINGPavir.Fa00048.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP71073650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.13e-81NAC domain containing protein 2