PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do003958.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family M-type_MADS
Protein Properties Length: 222aa    MW: 25369.1 Da    PI: 9.7186
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do003958.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF33.55.5e-111150342
                --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
      SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                i n++ r+  + +R + ++KK + L +LC+++++++++++
  Do003958.1 11 IVNNTTRHAVYKRRYKSLMKKTSDLATLCGIKACMVVYGE 50
                779999********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.9E-11160IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.49E-16175IPR002100Transcription factor, MADS-box
PROSITE profilePS5006613.498150IPR002100Transcription factor, MADS-box
CDDcd002665.41E-20281No hitNo description
PfamPF003192.4E-101150IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MARKKVNLQW IVNNTTRHAV YKRRYKSLMK KTSDLATLCG IKACMVVYGE GETQPVVWPS  60
VLEAKRVLKK FKSMPDRFKK MQNQEDFLHS RISMLQGQVC KSDHYNRELE TANLLHESLY  120
GCRTVLDTTT IEELNNLRWM VHTRTMEAKE RLRQLVGDGS IPKLQTSPTS PPQAFYTYTE  180
MQRLPSPEQH QDLQQGEPAN LDVNGGGLSA MVHSSFTGSH NG
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo003958.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004971693.15e-68agamous-like MADS-box protein AGL80
TrEMBLA0A1E5WKW81e-168A0A1E5WKW8_9POAL; Uncharacterized protein
STRINGPavir.Eb00487.1.p6e-75(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36336202
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.16e-25AGAMOUS-like 80