PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do004024.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ERF
Protein Properties Length: 316aa    MW: 35539.2 Da    PI: 4.4846
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do004024.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.41.2e-2098148155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 ++y+G+r+++ +g+W+AeIrdp++     r++lg++ taeeAa+a++ a+++++g
  Do004024.1  98 TQYRGIRRRP-WGKWAAEIRDPRK---GVRVWLGTYNTAEEAARAYDMAARRIHG 148
                 58********.**********954...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.93E-3198158No hitNo description
SMARTSM003803.2E-3599162IPR001471AP2/ERF domain
PROSITE profilePS5103224.82999156IPR001471AP2/ERF domain
SuperFamilySSF541715.56E-2399157IPR016177DNA-binding domain
PfamPF008471.6E-1399148IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.8E-3299157IPR001471AP2/ERF domain
PRINTSPR003672.4E-11100111IPR001471AP2/ERF domain
PRINTSPR003672.4E-11122138IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009873Biological Processethylene-activated signaling pathway
GO:0034059Biological Processresponse to anoxia
GO:0071456Biological Processcellular response to hypoxia
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MCGGAILSDL YSPVRRTVTA SDLWAESGSS KSGKNWKRSS WEFEEDNDDF EADFEDFEDC  60
SSEEEVDFGH EDKEFQMNSS NVEFNSHIAK VASRKRKTQY RGIRRRPWGK WAAEIRDPRK  120
GVRVWLGTYN TAEEAARAYD MAARRIHGQK AKVNFPDTIT AAAKRLRGRV PRLAKKIMSQ  180
ENLKFSNASE HVISAGSSTD ATVVKVELSE SVSPLPMSSA WLDVFELNQL EGKETTVETD  240
RETGVTTDMV FGNGEVGLAD DFAYYETYPN FMQLPYLEGN SYENIDALFN GEAAQDGVNI  300
GDLWSFDDVP MDCGVY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-21991561472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19297SRKRKT
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00230DAPTransfer from AT1G72360Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo004024.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012698773.10.0ethylene-responsive transcription factor ERF073
TrEMBLA0A1E5WNS80.0A0A1E5WNS8_9POAL; Ethylene-responsive transcription factor 1
STRINGSi030514m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145602123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.11e-28ethylene-responsive element binding protein