PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do004303.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

HD-ZIP

Protein Properties

Length: 512aa MW: 56408.4 Da PI: 7.4987

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do004303.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	44.5	2.7e-14	66	117	6	57
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++t++q+eeL +++ ++ +p+a++ e L +k gL + Vk+WFqNrR+k+ k Do004303.1 66 RHTPQQIEELIAAYDQCTHPDAKTQEALGTKNGLAPKLVKFWFQNRRTKMQK 117 589**********************************************976 PP
2	START	73.3	6.3e-24	217	384	4	167
HHHHHHHHHHHHHC-TT-EEEE..EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTTEEEEEE CS START 4 eeaaqelvkkalaeepgWvkss..esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetlakaetlevissggalqlm 94 e +++++ +a+ +ep+W e++n+ e+ + ++ + + +e+ r++++v + +a+lv +l+d++ +W++t++ +++ + g +m Do004303.1 217 AESMEQFLMLATKGEPMWQITTngEMLNYVEYGARMSPCLFgfcpkgFVVEVTRDTAMVWGSAADLVGILMDTA-RWSKTFP--GVVASVVAG---DVM 309 68999***************99999999999999887669999999**********************.***..444444444...589 PP EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--..-TTSEE-EESSEEEEEEEECTCEEEEEEE CS START 95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.sssvvRaellpSgiliepksnghskvtwv 167 +a+l + sp vp R + ++R+++ ++ +w+++dvSvd ++ s ++ ++llpSg+lie++sngh+k +++ Do004303.1 310 NAKLWVQSPRVPnRTVNILRFSKLITERKWAVMDVSVDGILGQQVmPSRYMGCRLLPSGCLIEDMSNGHCKSIYI 384 **********************************8777777789*********************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	4.71E-13	51	118	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.3E-14	57	121	IPR009057	Homeodomain-like
PROSITE profile	PS50071	12.422	58	118	IPR001356	Homeobox domain
SMART	SM00389	1.5E-9	61	122	IPR001356	Homeobox domain
CDD	cd00086	1.33E-9	66	118	No hit	No description
Pfam	PF00046	8.0E-12	66	117	IPR001356	Homeobox domain
PROSITE profile	PS50848	13.969	205	384	IPR002913	START domain
SuperFamily	SSF55961	2.06E-12	215	384	No hit	No description
Pfam	PF01852	1.0E-16	217	384	IPR002913	START domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0008289	Molecular Function	lipid binding

Sequence ? help Back to Top
Protein Sequence Length: 512 aa Download sequence Send to blast
MEKGGQQISE NGHDLDLTLG NDPSHQLRNN HEDATDDFLG DEGYAYTDPE DEDYVPGRKG 60 STRVKRHTPQ QIEELIAAYD QCTHPDAKTQ EALGTKNGLA PKLVKFWFQN RRTKMQKKAQ 120 LEQNKHIQQE NISLLTANQL FRQAMLTQSC ITCGSGTLRF NPSLEKQRLL IENARLKDEY 180 LRASTADNKI IRASAFTQPA PWIISGRADH EALTLHAESM EQFLMLATKG EPMWQITTNG 240 EMLNYVEYGA RMSPCLFGFC PKGFVVEVTR DTAMVWGSAA DLVGILMDTA RWSKTFPGVV 300 ASVVAGDVMN AKLWVQSPRV PNRTVNILRF SKLITERKWA VMDVSVDGIL GQQVMPSRYM 360 GCRLLPSGCL IEDMSNGHCK SIYIPGHMDN GLCMRKAGGT LKLAQQMMVS FYTAVSGPVT 420 TQTQAMSSIL EWFGSMGTGV ERRRTDASGS LVVYAPIGEE TMNAAIDGGA SVVFLPSGFA 480 ILPDGHSKAR RALVTAPSTS SAPVCRNNGV LF

Sequence ? help Back to Top

Protein Sequence Length: 512 aa Download sequence Send to blast

MEKGGQQISE NGHDLDLTLG NDPSHQLRNN HEDATDDFLG DEGYAYTDPE DEDYVPGRKG  60
STRVKRHTPQ QIEELIAAYD QCTHPDAKTQ EALGTKNGLA PKLVKFWFQN RRTKMQKKAQ  120
LEQNKHIQQE NISLLTANQL FRQAMLTQSC ITCGSGTLRF NPSLEKQRLL IENARLKDEY  180
LRASTADNKI IRASAFTQPA PWIISGRADH EALTLHAESM EQFLMLATKG EPMWQITTNG  240
EMLNYVEYGA RMSPCLFGFC PKGFVVEVTR DTAMVWGSAA DLVGILMDTA RWSKTFPGVV  300
ASVVAGDVMN AKLWVQSPRV PNRTVNILRF SKLITERKWA VMDVSVDGIL GQQVMPSRYM  360
GCRLLPSGCL IEDMSNGHCK SIYIPGHMDN GLCMRKAGGT LKLAQQMMVS FYTAVSGPVT  420
TQTQAMSSIL EWFGSMGTGV ERRRTDASGS LVVYAPIGEE TMNAAIDGGA SVVFLPSGFA  480
ILPDGHSKAR RALVTAPSTS SAPVCRNNGV LF

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do004303.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025801379.1	0.0	homeobox-leucine zipper protein ROC6-like
TrEMBL	A0A1E5V0Z2	0.0	A0A1E5V0Z2_9POAL; Homeobox-leucine zipper protein ROC7
STRING	Si032393m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8324	17	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00730.2	1e-56	HD-ZIP family protein