PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do004338.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ERF
Protein Properties Length: 212aa    MW: 22032.8 Da    PI: 12.3083
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do004338.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.83.6e-151160255
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                +++GVr+++ +grW+AeIrdp     r +r+ lg+f t eeAa+a   a ++++g
  Do004338.1 11 RVRGVRQRP-WGRWAAEIRDPQ----RgRRVCLGTFNTVEEAAAAFNTACLRIRG 60
                69*******.**********92....46*****************9999888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.8E-101156IPR001471AP2/ERF domain
PROSITE profilePS5103219.9411168IPR001471AP2/ERF domain
SMARTSM003802.8E-261174IPR001471AP2/ERF domain
PRINTSPR003671.5E-71223IPR001471AP2/ERF domain
SuperFamilySSF541713.07E-181268IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.0E-241368IPR001471AP2/ERF domain
CDDcd000188.73E-201368No hitNo description
PRINTSPR003671.5E-73450IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
EEEAVTAKGV RVRGVRQRPW GRWAAEIRDP QRGRRVCLGT FNTVEEAAAA FNTACLRIRG  60
PGASTNLPPP PSAGDTGPLP PHAASPLPPR PPLPPPAPRT LGHRAARRSE EGRQQRSSRI  120
TGWGLAAATK GPAAEVGRGG GGGSARGGGG RGSHGEGRPR RGACEVGRRW RRRRGATREV  180
GPAVAMRGGE RDARIGASIG PLDRAKTGCA AG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-17775170ATERF1
3gcc_A3e-17775170ATERF1
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo004338.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1E5WJG21e-139A0A1E5WJG2_9POAL; Uncharacterized protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115732835
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11140.17e-24cytokinin response factor 1