PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do004603.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family C2H2
Protein Properties Length: 207aa    MW: 21415.3 Da    PI: 7.739
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do004603.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2157e-05129149323
                 ETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                 Cp Cgk F+++     H+++H
  Do004603.1 129 CPFCGKEFRNHKAVCGHMKVH 149
                 *******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.284127154IPR007087Zinc finger, C2H2
SMARTSM003550.0034127149IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280129149IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MEGSSEDRCR SRLLADLYGS DEPEEGELVV PGPGYHSDAD TEEYYNNHRD CSSDSDETIS  60
DSVPAANYGG ASTSSSAPAN NNNNNGGGGA SSAAANNCAS ASTSSAAANN NKGGGGGAAC  120
SSAAPVLACP FCGKEFRNHK AVCGHMKVHR EQQGVGKGKG IKMGRLRQRP QRPPRCRPRR  180
LRAVLVSISV SESWPPTPPT SVGHGAQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo004603.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1E5WHJ11e-149A0A1E5WHJ1_9POAL; Uncharacterized protein
STRINGSb03g029910.12e-35(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76121136