PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do004661.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 197aa    MW: 20475.9 Da    PI: 4.4747
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do004661.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH171.1e-051231532055
                 HHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH  20 feeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 + +L+el+P+      +K++ +++LekA+ Y+k Lq
  Do004661.1 123 LRTLQELVPNG-----TKVDMVTMLEKAISYVKFLQ 153
                 66788888886.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.013103152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.27E-7122157No hitNo description
SuperFamilySSF474592.09E-8122164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.6E-7124159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MALVREHSGY GGFDSAEAAA AFDALRYGHD VLLGFDAAAL FRGSGTSASG AYVADGGKAW  60
PSTGSASVLA FDRATAAAAA PVGEEECDAW IDAMDQSYGG APAAPEARHA TTASVGFDAA  120
TGLRTLQELV PNGTKVDMVT MLEKAISYVK FLQLQVKVLA TDEFWPAQGG KAPEISQVRD  180
ALDAILSSAS QRRQLMN
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo004661.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3728843e-36AK372884.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3015A08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953650.16e-42putative transcription factor bHLH086
TrEMBLA0A1E5VS732e-45A0A1E5VS73_9POAL; Transcription factor bHLH83
STRINGPavir.Aa00612.1.p3e-51(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141238117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66470.13e-38ROOT HAIR DEFECTIVE6