PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do004693.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family M-type_MADS
Protein Properties Length: 240aa    MW: 27360.9 Da    PI: 9.847
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do004693.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF47.42.5e-151259249
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                +ie+++ r  tf kRr+g++K A+ LS+L++a+vav++ s++g++  +
  Do004693.1 12 FIEEERGRGLTFFKRRTGLFKAASDLSTLTGARVAVVLESESGRFSSF 59
                799*****************************************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.2E-11162IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.96363IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-8525IPR002100Transcription factor, MADS-box
CDDcd001201.17E-15662No hitNo description
SuperFamilySSF554557.85E-161074IPR002100Transcription factor, MADS-box
PfamPF003191.9E-171259IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-82540IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-84061IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MPRRARRSGV RFIEEERGRG LTFFKRRTGL FKAASDLSTL TGARVAVVLE SESGRFSSFG  60
TPEVGPIVDA FLSGDAPTDF NTSNEQKAKI TNLQNECFQV EKDKAMEDKN KKENMTRAKE  120
IQETSRMAKY VYGKVEDLDA TELFEMYREL SRIKQEIDDR LPALQRENQV EASGRQRDPS  180
FLQSTWWHSM PSHTMTQPKY SPGVPLKAPF LPQHPWKYGG QSSTGGVPKN KLGDLKFPWY
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo004693.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004971997.11e-102transcription factor RLM1
TrEMBLA0A1E5WGP11e-179A0A1E5WGP1_9POAL; Uncharacterized protein
STRINGPavir.Eb02038.1.p1e-95(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30892276
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01530.16e-13AGAMOUS-like 28