PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do004892.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 259aa    MW: 26891.3 Da    PI: 6.3721
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do004892.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.43.4e-057497326
                HHHHHHHHHHHHHHHHHHHHHHCT CS
         HLH  3 rahnerErrRRdriNsafeeLrel 26
                r+h e+E+rRR+ri+s +++Lr +
  Do004892.1 74 RNHREAEKRRRERIKSHLDRLRNI 97
                78********************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.91E-874120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MFPAAEVSAL AAGAGAAAGC QAEGGVLPML PPFFMGSIWP AVGAGPTGAA DSEEDEAAAA  60
AAAAAHDRAL AASRNHREAE KRRRERIKSH LDRLRNIDKA SLLAKAVERV RDLKQRVAGV  120
GEAAPAHLFP TEHDEIVVLA SGGAVFEASV CCDDRSDLLP ELIETLRALR LRTLRAEMAT  180
LGGRVRNVLV LARDVDGGGV VGDDDGYGRA NSAGSVEGNG SGGDFLKEAL RALVERPGAG  240
GGDRPKRRRV SDTNMQASA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1245249KRRRV
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo004892.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7279661e-130KJ727966.1 Zea mays clone pUT6079 bHLH transcription factor (bHLH48) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004981312.11e-114transcription factor bHLH106-like
SwissprotO806741e-41BH106_ARATH; Transcription factor bHLH106
TrEMBLA0A1E5UVK61e-180A0A1E5UVK6_9POAL; Uncharacterized protein
STRINGPavir.J24868.1.p1e-100(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP95783039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41130.12e-21bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]