PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do004914.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family B3
Protein Properties Length: 246aa    MW: 26816.7 Da    PI: 4.6888
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do004914.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B385.64.3e-2757140184
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                 f+kvltpsdv+k++rlv+pk++ae++      +++l +ed+ g  W+++++y+++s++yv+tkGW++Fv+a +L +gD+v F++
  Do004914.1  57 FDKVLTPSDVGKLNRLVVPKQHAERFFPAAGAGTQLCFEDRGGMPWRFRYSYWGSSQSYVMTKGWSRFVRAARLTAGDTVSFSR 140
                 89************************555567789***********************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.2E-3651142IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.37E-2854141IPR015300DNA-binding pseudobarrel domain
CDDcd100176.37E-2555140No hitNo description
PROSITE profilePS5086313.43757158IPR003340B3 DNA binding domain
SMARTSM010197.1E-1857149IPR003340B3 DNA binding domain
PfamPF023622.8E-2457141IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MYMDLSLGTL VEDTQEVQEE RQEEEQDDDL YQQQALGQDL QHGGGEPGHA VEREHMFDKV  60
LTPSDVGKLN RLVVPKQHAE RFFPAAGAGT QLCFEDRGGM PWRFRYSYWG SSQSYVMTKG  120
WSRFVRAARL TAGDTVSFSR AAAAAAGGRY FIDYRHCQRR SRDISFGDGA AVPAWPIVVG  180
VQRAAAGGRG ATTAVDMVPV PTCQDIEVGT TAGAKSFRLF GFNVECSGED APASASAEVE  240
YVDGDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A4e-44521553111B3 domain-containing transcription factor NGA1
5os9_B4e-44521553111B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo004914.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7284101e-108KJ728410.1 Zea mays clone pUT6715 ABI3VP1 transcription factor (ABI23) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822547.11e-135putative B3 domain-containing protein Os08g0157700
SwissprotQ7EZD52e-73Y8577_ORYSJ; Putative B3 domain-containing protein Os08g0157700
TrEMBLA0A1E5WI630.0A0A1E5WI63_9POAL; Putative B3 domain-containing protein
STRINGSi014362m1e-121(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141642426
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01030.16e-44B3 family protein