PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do004934.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family M-type_MADS
Protein Properties Length: 218aa    MW: 23782.4 Da    PI: 10.2207
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do004934.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF45.78.4e-151961244
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                rienk  rqv+++kR+ gi+KK +EL  L +a va+ ifs++ 
  Do004934.1 19 RIENKESRQVSLCKRKGGIIKKCSELHLLSGAHVAIAIFSKKE 61
                8***************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006619.5251058IPR002100Transcription factor, MADS-box
SMARTSM004325.6E-171069IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.4E-171164IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-121232IPR002100Transcription factor, MADS-box
PfamPF003191.9E-141960IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-123247IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-124768IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MMKPTKKTSK GRQKIEIRRI ENKESRQVSL CKRKGGIIKK CSELHLLSGA HVAIAIFSKK  60
EEQPQGGEVP AVTGGRPSRG GNVFAMGTPS VDHVLRRFAP LPGDELLPGS LEDTRAAAAE  120
RAVMEATARE VKETEALVEA EKKRMQAIGE KVVKAAEAAG KRFWWEVDVE ALGEAELPEF  180
ARALQRVREI VQREADKLQA SAPPAMVAAP WASIGARE
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo004934.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004965484.15e-94agamous-like MADS-box protein AGL62
TrEMBLA0A1E5V6081e-153A0A1E5V608_9POAL; Uncharacterized protein
STRINGSi007275m2e-93(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28333088
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-19AGAMOUS-like 62