PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do004940.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

MYB

Protein Properties

Length: 226aa MW: 24281.9 Da PI: 4.8401

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do004940.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.4	2.5e-16	15	62	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 + +WT+eEde l +av+++G +W++Ia + gR +k+c++rw ++l Do004940.1 15 KTPWTAEEDEALRRAVREHGRQNWAAIAGDVAGGRGAKSCRLRWCQHL 62 579**************************99*********9986 PP
2	Myb_DNA-binding	49.6	8.9e-16	70	111	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++T+eEd ++v+ + +G++ W+tIar++ gR+++ +k+rw++ Do004940.1 70 PFTPEEDARIVEQQRVHGNK-WATIARYLH-GRSDNAVKNRWNS 111 89****************.*****.*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	23.666	10	66	IPR017930	Myb domain
SuperFamily	SSF46689	1.95E-29	13	109	IPR009057	Homeodomain-like
SMART	SM00717	6.6E-16	14	64	IPR001005	SANT/Myb domain
Pfam	PF00249	3.2E-15	15	62	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.5E-21	17	69	IPR009057	Homeodomain-like
CDD	cd00167	1.01E-13	17	62	No hit	No description
SMART	SM00717	4.0E-12	67	115	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	18.144	69	117	IPR017930	Myb domain
Pfam	PF00249	5.2E-13	70	111	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.6E-20	70	115	IPR009057	Homeodomain-like
CDD	cd00167	1.06E-9	70	110	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
MAAECGEAGK ADCKKTPWTA EEDEALRRAV REHGRQNWAA IAGDVAGGRG AKSCRLRWCQ 60 HLAPELDSRP FTPEEDARIV EQQRVHGNKW ATIARYLHGR SDNAVKNRWN SALRKMQPQG 120 NPVAAAAAAA APQEEEADDA TEDQAAAAAA PACLDLFPLR AGEMREQAAA ADRFGVRDEE 180 EEGDDVASIG LTLGSPGLSE AELALSLRPV RPSSDRGDAA SFRLCL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	1e-26	9	115	1	106	B-MYB
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do004940.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004974756.1	1e-105	transcription factor MYB1
TrEMBL	A0A1E5V389	1e-160	A0A1E5V389_9POAL; Transcription factor MYB44
STRING	Si015776m	1e-104	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4960	34	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50060.1	6e-40	myb domain protein 77