PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do005020.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ARF
Protein Properties Length: 705aa    MW: 77910.4 Da    PI: 6.828
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do005020.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.33.5e-24138239199
                 EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                 f+k+lt sd++++g +++p++ ae++      +++   s++++ +d++g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F   + +++ l+
  Do005020.1 138 FCKTLTASDTSTHGGFSVPRRAAEDCfppldhSLQR-PSQEIVAKDLHGAEWKFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFL--RGEDGVLR 233
                 99****************************975554.4579************************************************..34899899 PP

                 EEEE-S CS
          B3  94 vkvfrk 99 
                 ++v+r+
  Do005020.1 234 LGVRRA 239
                 999986 PP
2Auxin_resp101.88.7e-34265344282
  Auxin_resp   2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                  +a+++++vF+++YnPr s+seF+++++k+ +++++++svGmR +m++e++d+serr++G+++g ++++p  W++SkW+sL
  Do005020.1 265 TQAVAMRTVFHIYYNPRLSQSEFIIPYWKFTRSFNQPFSVGMRCRMRYESDDASERRCTGIIIGSREAEP-MWHGSKWKSL 344
                 68999*****************************************************************.9*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.83E-41132253IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.2E-38134241IPR015300DNA-binding pseudobarrel domain
CDDcd100176.09E-23136238No hitNo description
PROSITE profilePS5086313.408138240IPR003340B3 DNA binding domain
SMARTSM010199.2E-24138240IPR003340B3 DNA binding domain
PfamPF023624.1E-22138239IPR003340B3 DNA binding domain
PfamPF065075.6E-29265344IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 705 aa     Download sequence    Send to blast
MAGIDLNTVE EEEDEEEAEA PPGAGGAVCL DLWHACAGPV APLPRKGSAV VYLPQGHLEH  60
IGGDAAADAA VPPHVFCRVV DVNLHADGAT DEVYARVSLL PEDEEAERRA RAREDEDAAR  120
GGEGGAAVKP LARTPHMFCK TLTASDTSTH GGFSVPRRAA EDCFPPLDHS LQRPSQEIVA  180
KDLHGAEWKF RHIYRGQPRR HLLTTGWSAF VNKKKLVSGD AVLFLRGEDG VLRLGVRRAA  240
QLKNVNLIPA PHNQCSNHRN LGNVTQAVAM RTVFHIYYNP RLSQSEFIIP YWKFTRSFNQ  300
PFSVGMRCRM RYESDDASER RCTGIIIGSR EAEPMWHGSK WKSLVVRWDD DIECRRPSRV  360
SPWEIELTGS VSGSQSHLCT PNSKRLKPCL PQANPEIVLP YGSVSSDFAG SARFHKVLQG  420
QELLGFKTHD RTAISASQGI EARNLQYSDE RSSSINMSNN ILGVPRFGVR SPTGIPGFPY  480
HCSGFGESQR FQKVLQGQEV FRSFREGALA NVHTRTAGMY QPDGTHASTA AYKWSTPQGC  540
DFRQPIKPVL LQASSPSSVL MFQQTSSKIP HLEYEYSCLD KDEDGRHDRA VPTQDMGRSN  600
QALSLWPHLV SDEAIDECTG TEKMHSPVSG AEHESNNEST VENGCKIFGI SLAEQVRSCD  660
EADSCNANCN SRLQPSQSQM PKSLGSCWTT VSALRFFSLL MLFWV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A1e-1062737418361Auxin response factor 1
4ldy_B1e-1062737418361Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo005020.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin under dark condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0690050.0BT069005.1 Zea mays full-length cDNA clone ZM_BFb0119L19 mRNA, complete cds.
GenBankJX4285080.0JX428508.1 Zea mays subsp. mays clone pUT3106 ARF12 ARF type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969490.20.0LOW QUALITY PROTEIN: auxin response factor 2-like
SwissprotQ0JKI90.0ARFB_ORYSJ; Auxin response factor 2
TrEMBLA0A1E5WEV60.0A0A1E5WEV6_9POAL; Auxin response factor
STRINGPavir.Eb02716.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25373580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.11e-152ARF family protein
Publications ? help Back to Top
  1. Khanday I,Yadav SR,Vijayraghavan U
    Rice LHS1/OsMADS1 controls floret meristem specification by coordinated regulation of transcription factors and hormone signaling pathways.
    Plant Physiol., 2013. 161(4): p. 1970-83
    [PMID:23449645]