PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do005045.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

bHLH

Protein Properties

Length: 240aa MW: 27053.3 Da PI: 6.3144

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do005045.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	19.5	1.8e-06	11	60	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +++ ++erE+r Rd+ N+ f eL +l ++ + + Ka iL +++ +k+L Do005045.1 11 KKVHKSEREKRKRDKQNDLFGELGNMLEPD----RQNNGKACILSDTTRILKDL 60 678899**********************97....57788888888888888776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	7.46E-12	7	78	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.5E-10	7	81	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.04E-4	8	65	No hit	No description
PROSITE profile	PS50888	11.115	10	60	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.1E-4	11	60	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
LNNKCEKKAP KKVHKSEREK RKRDKQNDLF GELGNMLEPD RQNNGKACIL SDTTRILKDL 60 LSQVESLRQE NGALKNESRY VALERNELVD ENNVIRNEIS GLQNELRMRM EGNPIWSHDV 120 PRSNLTAPHP ATTVFALQHS PHPPVIATMA PPLQQLAVLE QSYTAPRREL QLFPEAASTE 180 DTEPPQDQGI SNHVTRPQAR YPTTMTTLPV HVYPILPRME DEQCSSGTTG SGEEDGIVNH

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that plays a positive role in salt stress tolerance. Interacts with TIFY11A/JAZ9 and binds to the promoter of some potassium ion transporter genes to regulate potassium homeostasis during salt stress. {ECO:0000269\|PubMed:25617318}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do005045.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025804247.1	1e-165	transcription factor BHLH062-like
Refseq	XP_025804248.1	1e-165	transcription factor BHLH062-like
Swissprot	Q69V10	1e-114	BH062_ORYSJ; Transcription factor BHLH062
TrEMBL	A0A1E5WES3	1e-178	A0A1E5WES3_9POAL; Transcription factor bHLH47 (Fragment)
STRING	Pavir.Ba00364.1.p	1e-168	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2481	38	84

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47640.3	6e-30	bHLH family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Yilmaz A, et al. GRASSIUS: a platform for comparative regulatory genomics across the grasses. Plant Physiol., 2009. 149(1): p. 171-80 [PMID:18987217] Wu H,Ye H,Yao R,Zhang T,Xiong L OsJAZ9 acts as a transcriptional regulator in jasmonate signaling and modulates salt stress tolerance in rice. Plant Sci., 2015. 232: p. 1-12 [PMID:25617318]