PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do005067.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 257aa    MW: 28121.2 Da    PI: 9.5632
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do005067.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.11e-1069114454
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  h+e+ErrRR+riN  +++Lr+++P       + ++Ka+ L ++v+ +k L
  Do005067.1  69 VHSEAERRRRERINAHLATLRRMVPDT-----RQMDKATLLARVVDQVKLL 114
                 59************************8.....689***9999999977765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.01E-1356122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.69765114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-869114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.1E-1369127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.2E-1071120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048735.30E-6159225No hitNo description
Gene3DG3DSA:3.30.70.2608.7E-5159225No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MAACQPLQEG NELQGLQPYD VCDPAVFRGP VLLPRQASSA PPAVLVAPLE MSSSSGSGRS  60
ATEARALKVH SEAERRRRER INAHLATLRR MVPDTRQMDK ATLLARVVDQ VKLLKRKASE  120
ATHSMALPPE TNEVSIELHT GDNGVIVAGN DKMIYMKASI SCDDRPDLIA GLTQAFHGLR  180
LRTVRADLTS LGGRVQHVFV LCREESWGSA GASLRSLKEA VRQALDRVAS PEMAYGSSPF  240
QSKRQRILES HYSIMSI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17378ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo005067.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004968277.11e-146transcription factor bHLH30
RefseqXP_004968280.11e-146transcription factor bHLH30
TrEMBLA0A1E5WEY00.0A0A1E5WEY0_9POAL; Transcription factor bHLH51
STRINGPavir.Eb00492.1.p1e-147(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33473678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.14e-31bHLH family protein