PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do005082.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family HSF
Protein Properties Length: 286aa    MW: 32233.4 Da    PI: 10.0547
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do005082.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.41.6e-35381302103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k++++++d+++++++sw e+g++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ Fkkg k+ll++i+
    Do005082.1  38 FLTKTFQLVDDPRTDHVVSWGEDGTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVADR---------WEFANEFFKKGAKNLLSEIH 125
                   9****************************************************************999.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r+k +
    Do005082.1 126 RRKPS 130
                   **975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.4E-3728121IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.0E-5834127IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.44E-3435127IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000563.0E-203861IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.3E-3138127IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.0E-207688IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434077101IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.0E-2089101IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MAFLVERRCS GGGGGETAAV SMDVEMSSHA KPVVPAPFLT KTFQLVDDPR TDHVVSWGED  60
GTTFVVWRPP EFARDLLPNY FKHNNFSSFV RQLNTYGFRK IVADRWEFAN EFFKKGAKNL  120
LSEIHRRKPS SCSQQPPQLQ SLPPHQPSYL SLFSPPQSHQ TPLAYRVQQE GGHGGKDFLA  180
TLSEDNRELR RRNSLLLSEL AHMRRLYNDI IYFLQNHVEP VPPPPPPSQA TGYTLVELGS  240
ADTSPPTTRG DVEAPVRLFG VRLKRRQEEE GAGGRAAGRK RRRPSM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-223413017123Heat shock factor protein 1
5d5u_B2e-223412726129Heat shock factor protein 1
5d5v_B2e-223412726129Heat shock factor protein 1
5d5v_D2e-223412726129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1263282KRRQEEEGAGGRAAGRKRRR
2278282RKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo005082.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2432491e-158AC243249.1 Panicum virgatum clone PV_ABa094-D05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797236.11e-136heat stress transcription factor B-4d-like
SwissprotQ10KX86e-93HFB4D_ORYSJ; Heat stress transcription factor B-4d
TrEMBLA0A1E5WG310.0A0A1E5WG31_9POAL; Heat stress transcription factor B-4b
STRINGPavir.Ib01755.1.p1e-128(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.12e-61heat shock transcription factor B4