PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do005083.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family M-type_MADS
Protein Properties Length: 206aa    MW: 22564.4 Da    PI: 4.8552
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do005083.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF33.36.3e-111272046
                HHHHHHHHHHHHT-EEEEEEE-TTSEE CS
      SRF-TF 20 ilKKAeELSvLCdaevaviifsstgkl 46
                ++KKA+ELS+LC+a va++ fs+ g+ 
  Do005083.1  1 MFKKASELSILCGAMVAIVAFSPAGRP 27
                69*********************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF003193.6E-12130IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.22E-13157IPR002100Transcription factor, MADS-box
SMARTSM004320.006133IPR002100Transcription factor, MADS-box
PROSITE profilePS5006612.741134IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MFKKASELSI LCGAMVAIVA FSPAGRPFSF GSPSFKAVID RFLTLIGPAM SGESCDSSSG  60
ETNTMKEGLE CTELEQSIEG EKKRKERLKE AIERNMDGRL MDWLTANAYP SGLDELQEFH  120
KKLVEIQDAV KEKIKQVLQE ERHPTRLYPP RFVDLASKYQ LDSQTATPIS SVAPNSNHGP  180
DLNESLASGD HAIGTSVNCP SDQVDG
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo005083.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004986970.11e-100agamous-like MADS-box protein AGL29
TrEMBLA0A1E5WG261e-152A0A1E5WG26_9POAL; Uncharacterized protein
STRINGSi038960m3e-99(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122436128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G66656.14e-15AGAMOUS-like 91